9H6X | pdb_00009h6x

Cryo-EM structure of lipid-bound human myoferlin (25 mol% DOPS/5 mol% PI(4,5)P2 nanodisc)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth D]	Acyl_transf_1	e9h6xD3	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Acyl_transf_1	ECOD (v295.2)
A [auth D]		e9h6xD7	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D]	PF16165	Ferlin C-terminus (Ferlin_C)	Ferlin C-terminus	-	Family
A [auth D]	PF08165	FerA (NUC095) domain (FerA)	FerA (NUC095) domain	This is central domain A in proteins of the Ferlin family [1].	Domain
A [auth D]	PF22901	Ferlin dsRNA-binding domain-like domain (dsrm_Ferlin)	Ferlin dsRNA-binding domain-like domain	This entry represents a domain which structurally resembles double stranded RNA binding domains found in ferlin proteins [1].	Domain
A [auth D]	PF08150	FerB (NUC096) domain (FerB)	FerB (NUC096) domain	This is central domain B in proteins of the Ferlin family [1].	Domain
A [auth D]	PF08151	FerI (NUC094) domain (FerI)	FerI (NUC094) domain	This domain is present in proteins of the Ferlin family. It is often located between two C2 domains [1].	Domain
A [auth D]	PF00168	C2 domain (C2)	C2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D]	Myoferlin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipid binding lipid binding	regulation of localization cellular localization regulation of cellular process transport modulation of chemical synaptic transmission signaling cell communication localization synaptic signaling regulation of secretion by cell secretion by cell signal release establishment of localization in cell trans-synaptic signaling regulation of localization cellular localization regulation of cellular process transport modulation of chemical synaptic transmission signaling cell communication localization synaptic signaling regulation of secretion by cell secretion by cell signal release establishment of localization in cell trans-synaptic signaling regulation of biological process regulation of signaling neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport biological regulation export from cell cell-cell signaling neurotransmitter transport establishment of localization regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling regulation of neurotransmitter secretion anterograde trans-synaptic signaling regulation of cell communication cellular process multicellular organismal process system process muscle contraction muscle system process membrane organization wound healing response to stimulus plasma membrane repair cellular component organization response to stress plasma membrane organization cellular component organization or biogenesis response to wounding endomembrane system organization circulatory system process blood circulation	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane extracellular exosome membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle intracellular membraneless organelle centrosome microtubule organizing center cytoskeleton centriolar satellite membraneless organelle microtubule cytoskeleton membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola endosome membrane endosome intracellular vesicle late endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane late endosome cytoplasm synapse transport vesicle membrane presynapse synaptic vesicle synaptic vesicle membrane cell junction transport vesicle exocytic vesicle membrane secretory vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D]	IPR037723	Ferlin, fourth C2 domain	Domain
A [auth D]	IPR012560	Ferlin A-domain	Domain
A [auth D]	IPR006614	Peroxin/Ferlin domain	Domain
A [auth D]	IPR037721	Ferlin family	Family
A [auth D]	IPR037724	Ferlin, fifth C2 domain	Domain
A [auth D]	IPR037722	Ferlin, third C2 domain	Domain
A [auth D]	IPR012968	FerIin domain	Domain
A [auth D]	IPR000008	C2 domain	Domain
A [auth D]	IPR055072	Ferlin, dsRNA-binding domain-like domain	Domain
A [auth D]	IPR012561	Ferlin B-domain	Domain
A [auth D]	IPR037725	Ferlin, sixth C2 domain	Domain
A [auth D]	IPR032362	Ferlin, C-terminal domain	Domain
A [auth D]	IPR035892	C2 domain superfamily	Homologous Superfamily
A [auth D]	IPR037726	Ferlin, first C2 domain	Domain
A [auth D]	IPR037720	Ferlin, second C2 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D]	: Q9NZM1	malignant glioma MALT lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adenoma pituitary cancer atypical teratoid rhabdoid tumor tuberculosis chronic kidney disease diabetes mellitus facioscapulohumeral muscular dystrophy limb-girdle muscular dystrophy lung carcinoma malignant mesothelioma myopathy malignant glioma MALT lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adenoma pituitary cancer atypical teratoid rhabdoid tumor tuberculosis chronic kidney disease diabetes mellitus facioscapulohumeral muscular dystrophy limb-girdle muscular dystrophy lung carcinoma malignant mesothelioma myopathy pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis psoriasis Becker muscular dystrophy ulcerative colitis Crohn disease Duchenne muscular dystrophy glioblastoma lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma astrocytic tumor subependymal giant cell astrocytoma breast cancer dermatomyositis Emery-Dreifuss muscular dystrophy juvenile dermatomyositis lung cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.