9H4Q | pdb_00009h4q

Cryo-EM structure of the SEAC wing - EGOC


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth Y]SCOP2B SuperfamilySNARE-like 8091556 3001113 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyRas-like P-loop GTPases 8093365 3002022 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8093367 3001810 SCOP2B (2022-06-29)
B [auth a]SCOP2B SuperfamilyRas-like P-loop GTPases 8093368 3002022 SCOP2B (2022-06-29)
B [auth a]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8093370 3001810 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth Y]PF16818Protein SLM4 (SLM4)Protein SLM4The fungal protein SLM4 (EGO3, GSE1) is a component of the GSE complex and the EGO (TOR) complex . The GSE complex is required for trafficking GAP1 out of the endosome [1]. The EGO complex is involved in the regulation of autophagy and cell growth [2 ...The fungal protein SLM4 (EGO3, GSE1) is a component of the GSE complex and the EGO (TOR) complex . The GSE complex is required for trafficking GAP1 out of the endosome [1]. The EGO complex is involved in the regulation of autophagy and cell growth [2]. SLM4 is required for the integrity and function of the EGO complex [2].
Domain
F [auth X]PF12257Vacuolar membrane-associated protein Iml1, N-terminal domain (IML1)Vacuolar membrane-associated protein Iml1, N-terminal domainProteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subu ...Proteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subunit of both the SEA (Seh1-associated) and Iml1 complexes (Iml1-Npr2-Npr3). SEA complex is associates dynamically with the vacuole and is involved in autophagy [1, 2]. Iml1 complex is required for non-nitrogen-starvation (NNS)-induced autophagy [3].
Domain
D [auth T]PF06218Nitrogen permease regulator 2 (NPR2)Nitrogen permease regulator 2- Family
A [auth C]PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B [1,2,3,4].
Domain
A [auth C]PF05773RWD domain (RWD)RWD domainThis domain was identified in WD40 repeat proteins and Ring finger domain proteins [1]. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. It ...This domain was identified in WD40 repeat proteins and Ring finger domain proteins [1]. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain [1] after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices [2].
Domain
A [auth C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth Y]Protein SLM4
H [auth U]Protein EGO2-
G [auth R]Protein MEH1-
F [auth X]Vacuolar membrane-associated protein IML1
E [auth h]Nitrogen permease regulator 3-
D [auth T]Nitrogen permease regulator 2-
C [auth c]GTP-binding protein GTR2
B [auth a]GTP-binding protein GTR1
A [auth C]Maintenance of telomere capping protein 5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth Y]IPR020233GSE/EGO complex subunit Slm4Family
H [auth U]IPR021591YNR034W-A/EGO2Family
H [auth U]IPR035098YNR034W-A/EGO2 superfamilyHomologous Superfamily
G [auth R]IPR028209LAMTOR1/MEH1Family
F [auth X]IPR048255Vacuolar membrane-associated protein Iml1, N-terminal domainDomain
F [auth X]IPR000591DEP domainDomain
F [auth X]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
F [auth X]IPR045838DEPDC5, C-terminalDomain
F [auth X]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth X]IPR027244Vacuolar membrane-associated protein Iml1Family
E [auth h]IPR005365Nitrogen permease regulator 3Family
E [auth h]IPR056603GATOR1 complex protein NPRL3, C-terminal HTH domainDomain
D [auth T]IPR009348Nitrogen permease regulator 2-likeFamily
C [auth c]IPR006762Gtr1/RagA G proteinFamily
C [auth c]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth c]IPR039400RagC/DFamily
B [auth a]IPR039397RagA/BFamily
B [auth a]IPR006762Gtr1/RagA G proteinFamily
B [auth a]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth C]IPR049566WDR59/RTC1-like, RING zinc finger domainDomain
A [auth C]IPR049567GATOR complex protein WDR59-likeFamily
A [auth C]IPR019775WD40 repeat, conserved siteConserved Site
A [auth C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth C]IPR001680WD40 repeatRepeat
A [auth C]IPR006575RWD domainDomain
A [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily