9GY6 | pdb_00009gy6

Mycobacterial cytochrome bc1:aa3 with inhibitor

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8075786 3000671 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8075786 3000671 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H,
S [auth T]		PF12270Cytochrome c oxidase subunit IV (Cyt_c_ox_IV)Cytochrome c oxidase subunit IV- Family
F,
Q [auth R]		PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
C,
N [auth O]		PF13442Cytochrome C oxidase, cbb3-type, subunit III (Cytochrome_CBB3)Cytochrome C oxidase, cbb3-type, subunit IIIDomain
C,
N [auth O]		PF00034Cytochrome c (Cytochrom_C)Cytochrome cThe Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. Domain
B,
M [auth N]		PF13631Cytochrome b(N-terminal)/b6/petB (Cytochrom_B_N_2)Cytochrome b(N-terminal)/b6/petBDomain
J,
U [auth V]		PF17174Domain of unknown function (DUF5130) (DUF5130)Domain of unknown function (DUF5130)- Family
A,
L [auth M]		PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I,
T [auth U]		Secreted protein- -
H,
S [auth T]		Cytochrome c oxidase polypeptide 4
G,
R [auth S]		Cytochrome c oxidase subunit 3
F,
Q [auth R]		Cytochrome c oxidase subunit 1
E,
P [auth Q]		Cytochrome c oxidase subunit 2
D,
O [auth P]		Transmembrane protein- -
C,
N [auth O]		Cytochrome bc1 complex cytochrome c subunit -
B,
M [auth N]		Cytochrome bc1 complex cytochrome b subunit
K [auth L],
V [auth X]		Superoxide dismutase [Cu-Zn] - -
J,
U [auth V]		DUF5130 domain-containing protein- - -
A,
L [auth M]		Cytochrome bc1 complex Rieske iron-sulfur subunit -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H,
S [auth T]		IPR021050Cytochrome c oxidase subunit IV, actinobacteriaFamily
G,
R [auth S]		IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
G,
R [auth S]		IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
G,
R [auth S]		IPR000298Cytochrome c oxidase subunit III-likeDomain
G,
R [auth S]		IPR024791Cytochrome c oxidase subunit IIIFamily
F,
Q [auth R]		IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
F,
Q [auth R]		IPR000883Cytochrome c oxidase subunit IFamily
F,
Q [auth R]		IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
F,
Q [auth R]		IPR023616Cytochrome c oxidase-like, subunit I domainDomain
F,
Q [auth R]		IPR014241Cytochrome c oxidase, subunit I bacterial typeFamily
E,
P [auth Q]		IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
E,
P [auth Q]		IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
E,
P [auth Q]		IPR008972CupredoxinHomologous Superfamily
E,
P [auth Q]		IPR001505Copper centre Cu(A)Binding Site
E,
P [auth Q]		IPR045187Cytochrome c/quinol oxidase subunit IIFamily
D,
O [auth P]		IPR024341Protein of unknown function DUF2631Family
C,
N [auth O]		IPR009152Cytochrome bc1 complex, cytochrome c subunitFamily
C,
N [auth O]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
C,
N [auth O]		IPR050597Cytochrome c Oxidase SubunitFamily
C,
N [auth O]		IPR009056Cytochrome c-like domainDomain
B,
M [auth N]		IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
B,
M [auth N]		IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
B,
M [auth N]		IPR005797Cytochrome b/b6, N-terminal domainDomain
K [auth L],
V [auth X]		IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyHomologous Superfamily
K [auth L],
V [auth X]		IPR018152Superoxide dismutase, copper/zinc, binding siteBinding Site
K [auth L],
V [auth X]		IPR001424Superoxide dismutase, copper/zinc binding domainDomain
J,
U [auth V]		IPR033437Protein of unknown function DUF5130Family
A,
L [auth M]		IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
A,
L [auth M]		IPR045603QcrA subunit, N-terminalDomain
A,
L [auth M]		IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
A,
L [auth M]		IPR014349Rieske iron-sulphur proteinFamily