9E2P | pdb_00009e2p

Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF08355	EF hand associated (EF_assoc_1)	EF hand associated	-	Family
A, C	PF08356	EF hand associated (EF_assoc_2)	EF hand associated	-	Family
A, C	PF00071	Ras family (Ras)	Ras family	Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...	Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Trafficking kinesin protein 1	cytoskeletal protein binding protein binding binding myosin binding signaling receptor binding GABA receptor binding	establishment of organelle localization cellular localization organelle transport along microtubule transport localization mitochondrion localization mitochondrion transport along microtubule organelle localization establishment of localization in cell transport along microtubule axonal transport of mitochondrion anterograde axonal transport establishment of mitochondrion localization intracellular transport establishment of organelle localization cellular localization organelle transport along microtubule transport localization mitochondrion localization mitochondrion transport along microtubule organelle localization establishment of localization in cell transport along microtubule axonal transport of mitochondrion anterograde axonal transport establishment of mitochondrion localization intracellular transport anterograde axonal transport of mitochondrion axonal transport establishment of localization axo-dendritic transport establishment of mitochondrion localization, microtubule-mediated microtubule-based transport cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process endosome to lysosome transport lysosomal transport vesicle-mediated transport vacuolar transport developmental process neurogenesis multicellular organism development multicellular organismal process cellular developmental process cell differentiation anatomical structure development nervous system development system development establishment of protein localization protein targeting vesicle cytoskeletal trafficking vesicle localization establishment of vesicle localization vesicle transport along microtubule mitochondrion distribution	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic vesicle intracellular vesicle vesicle somatodendritic compartment cell projection dendrite membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic vesicle intracellular vesicle vesicle somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection neuron projection cytoplasm axon axon cytoplasm cytoplasmic region plasma membrane bounded cell projection cytoplasm
A, C	Mitochondrial Rho GTPase 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular homeostasis homeostatic process regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation regulation of organelle organization cellular component organization organelle organization regulation of mitochondrion organization cellular process cellular component organization or biogenesis mitochondrion organization cellular response to stimulus cellular homeostasis homeostatic process regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation regulation of organelle organization cellular component organization organelle organization regulation of mitochondrion organization cellular process cellular component organization or biogenesis mitochondrion organization cellular response to stimulus cellular localization response to stimulus transport signaling apoptotic mitochondrial changes mitochondrial outer membrane permeabilization involved in programmed cell death cell communication mitochondrial membrane organization localization positive regulation of mitochondrial membrane permeability involved in apoptotic process establishment of localization in cell positive regulation of mitochondrial membrane permeability positive regulation of membrane permeability regulation of biological quality signal transduction regulation of mitochondrial membrane permeability mitochondrial transport membrane organization intracellular transport cell death establishment of localization apoptotic signaling pathway regulation of membrane permeability regulation of mitochondrial membrane permeability involved in apoptotic process apoptotic process mitochondrial outer membrane permeabilization programmed cell death establishment of organelle localization organelle transport along microtubule establishment of mitochondrion localization mitochondrion localization establishment of mitochondrion localization, microtubule-mediated mitochondrion transport along microtubule organelle localization microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR022154	Trafficking kinesin-binding protein, C-terminal	Domain
B, D	IPR051946	Intracellular Trafficking Regulator	Family
B, D	IPR006933	HAP1, N-terminal	Domain
A, C	IPR005225	Small GTP-binding domain	Domain
A, C	IPR020860	MIRO domain	Domain
A, C	IPR001806	Small GTPase	Family
A, C	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, C	IPR013567	EF hand associated, type-2	Domain
A, C	IPR021181	Mitochondrial Rho GTPase	Family
A, C	IPR013566	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Domain
A, C	IPR002048	EF-hand domain	Domain
A, C	IPR011992	EF-hand domain pair	Homologous Superfamily
A, C	IPR052266	Mitochondrial Rho GTPase/EF-hand domain-containing protein	Family
A, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: Q8IXI2	breast cancer osteosarcoma dermatomyositis ovarian cancer glioblastoma tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.