9D9Z | pdb_00009d9z

Structure of human UBR4-KCMF1-CaM E3 ligase complex (Silencing Factor of the Integrated stress response, SiFI)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyEF-hand 8033438 3001983 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyEF-hand 8033438 3001983 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02207Putative zinc finger in N-recognin (UBR box) (zf-UBR)Putative zinc finger in N-recognin (UBR box)- Family
A, B
PF19423E3 ubiquitin-protein ligase UBR4 N-terminal (E3_UBR4_N)E3 ubiquitin-protein ligase UBR4 N-terminalThis entry represents the N-terminal of E3 ubiquitin-protein ligases UBR4 (POE or PUSHOVER in Drosophila), which are components of the N-rule pathway, identified as noncanonical N-recognins implicated in bulk lysosomal degradation and autophagy. Thes ...This entry represents the N-terminal of E3 ubiquitin-protein ligases UBR4 (POE or PUSHOVER in Drosophila), which are components of the N-rule pathway, identified as noncanonical N-recognins implicated in bulk lysosomal degradation and autophagy. These are extraordinarily large proteins that recognise and bind to proteins with N-terminal destabilising residues according to the N-end rule leading them to their ubiquitination and degradation. These proteins share a UBR box (Pfam:PF02207) with others E3-ligases UBR box proteins but UBR4 lacks the ubiquitylation domain, suggesting that it may interact with other catalytic proteins [1,2,3].
Domain
A, B
PF13764E3 ubiquitin-protein ligase UBR4 (E3_UbLigase_R4)E3 ubiquitin-protein ligase UBR4- Family
C, D
PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
E, F
PF00569Zinc finger, ZZ type (ZZ)Zinc finger, ZZ typeZinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure [2]. Domain
E, F
PF05605Drought induced 19 protein (Di19), zinc-binding (zf-Di19)Drought induced 19 protein (Di19), zinc-bindingThis family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [1]. This domain is a zinc-binding domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
UBR4 (endogenously FLAG-tagged at the N-terminus),E3 ubiquitin-protein ligase UBR4,E3 ubiquitin-protein ligase UBR4,E3 ubiquitin-protein ligase UBR4
C, D
Calmodulin-1
E, F
E3 ubiquitin-protein ligase KCMF1

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosQ5T4S7
C, D
PharosP0DP23
E, F
PharosQ9P0J7