9CMW | pdb_00009cmw

The cryo-EM structure of BamACDE complex from Neisseria gonorrhoeae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth D]SCOP2B SuperfamilyTPR-like 8061316 3001345 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPOTRA domain-like 8052250 3002100 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPOTRA domain-like 8052248 3002100 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPOTRA domain-like 8052249 3002100 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPorins 8052254 3000224 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPOTRA domain-like 8052251 3002100 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPOTRA domain-like 8052252 3002100 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth E]PF04355Outer membrane protein assembly factor BamE domain (BamE)Outer membrane protein assembly factor BamE domainThis domain is found in bacterial outer membrane lipoproteins probably involved in maintaining the structural integrity of the cell envelope [1], including Outer membrane protein assembly factor BamE from Vibrio cholerae (also known as SmpA). The lip ...This domain is found in bacterial outer membrane lipoproteins probably involved in maintaining the structural integrity of the cell envelope [1], including Outer membrane protein assembly factor BamE from Vibrio cholerae (also known as SmpA). The lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (Pfam:PF00691).
Domain
C [auth D]PF13525Outer membrane lipoprotein (YfiO)Outer membrane lipoprotein- Repeat
PF07244Surface antigen variable number repeat (POTRA)Surface antigen variable number repeatThis family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members ...This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Domain
PF01103Omp85 superfamily domain (Omp85)Omp85 superfamily domainThe Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ...The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth C]Outer membrane protein assembly factor bamC- - -
D [auth E]Outer membrane protein assembly factor BamE
C [auth D]Outer membrane protein assembly factor BamD-
Outer membrane protein assembly factor BamA-