9AZ3 | pdb_00009az3

Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth N]	PF00053	Laminin EGF domain (EGF_laminin)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain
B [auth N]	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)		Domain
A [auth G]	PF00053	Laminin EGF domain (EGF_laminin)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain
A [auth G]	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth N]	Netrin-4	extracellular matrix binding binding protein binding laminin-1 binding laminin binding	multicellular organismal process regulation of developmental process signaling gland development branching involved in salivary gland morphogenesis cell communication regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signaling multicellular organism development gland morphogenesis salivary gland morphogenesis anatomical structure development regulation of branching involved in salivary gland morphogenesis extracellular matrix-cell signaling regulation of morphogenesis of an epithelium multicellular organismal process regulation of developmental process signaling gland development branching involved in salivary gland morphogenesis cell communication regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signaling multicellular organism development gland morphogenesis salivary gland morphogenesis anatomical structure development regulation of branching involved in salivary gland morphogenesis extracellular matrix-cell signaling regulation of morphogenesis of an epithelium animal organ morphogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis system development developmental process regulation of morphogenesis of a branching structure epithelium development regulation of biological process regulation of animal organ morphogenesis biological regulation animal organ development morphogenesis of an epithelium salivary gland development tissue development tissue morphogenesis anatomical structure morphogenesis morphogenesis of a branching structure cellular process exocrine system development morphogenesis of a branching epithelium cellular developmental process cell development developmental maturation nervous system development generation of neurons neurogenesis neuron differentiation neuron remodeling anatomical structure maturation cell differentiation neuron development neuron maturation cell maturation	cellular anatomical structure extracellular region basement membrane cell periphery extracellular matrix external encapsulating structure plasma membrane membrane
A [auth G]	Laminin subunit gamma-1	structural molecule activity extracellular matrix structural constituent	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation anatomical structure development positive regulation of cellular process cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion endoderm development tissue development cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation cell junction organization cell junction assembly cell-substrate junction assembly cell-substrate junction organization hemidesmosome assembly cellular component disassembly extracellular matrix disassembly extracellular matrix organization extracellular structure organization external encapsulating structure organization cell migration cell motility positive regulation of cell adhesion regulation of cell adhesion cellular response to stimulus positive regulation of cell communication regulation of integrin-mediated signaling pathway positive regulation of signal transduction response to stimulus signaling regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of integrin-mediated signaling pathway signal transduction regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling multicellular organismal process maintenance of blood-brain barrier multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis regulation of cellular component organization regulation of basement membrane organization regulation of extracellular matrix organization basement membrane organization	laminin complex basement membrane cell periphery extracellular matrix protein-containing complex cellular anatomical structure external encapsulating structure laminin-1 complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle laminin complex basement membrane cell periphery extracellular matrix protein-containing complex cellular anatomical structure external encapsulating structure laminin-1 complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle laminin-10 complex intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen endoplasmic reticulum cytoplasm laminin-11 complex protein complex involved in cell-matrix adhesion protein complex involved in cell adhesion

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth N]	IPR008211	Laminin, N-terminal	Domain
B [auth N]	IPR001134	Netrin domain	Domain
B [auth N]	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
B [auth N]	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
B [auth N]	IPR035811	Netrin-4, NTR domain	Domain
B [auth N]	IPR050440	Laminin/Netrin Extracellular Matrix	Family
B [auth N]	IPR002049	Laminin-type EGF domain	Domain
B [auth N]	IPR018933	Netrin module, non-TIMP type	Domain
A [auth G]	IPR008211	Laminin, N-terminal	Domain
A [auth G]	IPR002049	Laminin-type EGF domain	Domain
A [auth G]	IPR000742	EGF-like domain	Domain
A [auth G]	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
A [auth G]	IPR050440	Laminin/Netrin Extracellular Matrix	Family
A [auth G]	IPR000034	Laminin IV	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth G]	Pharos: P11047	Marfan syndrome aortic disease colorectal cancer prostate cancer malignant glioma nasopharyngeal carcinoma ovarian cancer acne plasma cell myeloma atypical teratoid rhabdoid tumor Prostatic Neoplasms colorectal adenoma Duchenne muscular dystrophy Fuchs' endothelial dystrophy invasive ductal breast carcinoma Marfan syndrome aortic disease colorectal cancer prostate cancer malignant glioma nasopharyngeal carcinoma ovarian cancer acne plasma cell myeloma atypical teratoid rhabdoid tumor Prostatic Neoplasms colorectal adenoma Duchenne muscular dystrophy Fuchs' endothelial dystrophy invasive ductal breast carcinoma lung cancer malignant mesothelioma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor breast carcinoma subependymal giant cell astrocytoma ductal breast carcinoma in situ gastric carcinoma juvenile dermatomyositis malignant ependymoma malignant pancreatic neoplasm myopathy osteosarcoma pilocytic astrocytoma astrocytic tumor breast fibroadenoma ulcerative colitis dermatomyositis Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.