8FVI | pdb_00008fvi

Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth y]SCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyCytidine deaminase-like 8087262 3001838 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyCore binding factor beta, CBF 8042548 3001169 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth z]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (utative)
F [auth x]1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin RepeatsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF18771APOBEC3H (APOBEC3H)APOBEC3H- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth z]Elongin-C
G [auth y]Elongin-B
F [auth x]Cullin 5
E [auth C]RNA(5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')---
D [auth B]RNA(5'-R(AP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')---
C [auth A]DNA dC->dU-editing enzyme APOBEC-3H
B [auth 1]Virion infectivity factor
A [auth 0]Core-binding factor subunit beta

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth z]IPR016073SKP1 component, POZ domainDomain
H [auth z]IPR001232S-phase kinase-associated protein 1-likeFamily
H [auth z]IPR039948Elongin-CFamily
H [auth z]IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
G [auth y]IPR000626Ubiquitin-like domainDomain
G [auth y]IPR039049Elongin BFamily
G [auth y]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
F [auth x]IPR045093CullinFamily
F [auth x]IPR016158Cullin homology domainDomain
F [auth x]IPR016157Cullin, conserved siteConserved Site
F [auth x]IPR059120Cullin-like, alpha+beta domainDomain
F [auth x]IPR001373Cullin, N-terminalDomain
F [auth x]IPR019559Cullin, neddylation domainDomain
F [auth x]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
F [auth x]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth x]IPR036317Cullin homology domain superfamilyHomologous Superfamily
F [auth x]IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
C [auth A]IPR041512APOBEC3HFamily
C [auth A]IPR050610APOBEC Cytidine DeaminaseFamily
C [auth A]IPR016193Cytidine deaminase-likeHomologous Superfamily
C [auth A]IPR002125Cytidine and deoxycytidylate deaminase domainDomain
C [auth A]IPR016192APOBEC/CMP deaminase, zinc-bindingBinding Site
B [auth 1]IPR000475Retroviral Vif (Viral infectivity) proteinFamily
A [auth 0]IPR003417Core-binding factor, beta subunitFamily
A [auth 0]IPR036552Core-binding factor, beta subunit superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
H [auth z]PharosQ15369
G [auth y]PharosQ15370
F [auth x]PharosQ93034
C [auth A]PharosQ6NTF7
A [auth 0]PharosQ13951