8Z9X | pdb_00008z9x

Cryo-EM structure of Phytanoyl-CoA-bound human very long-chain fatty acid ABC transporter ABCD3

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	ABC_tran+ABC_membrane	e8z9xB01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: ABC_tran+ABC_membrane	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF06472	ABC transporter transmembrane region 2 (ABC_membrane_2)	ABC transporter transmembrane region 2	-	Family
A [auth B], B [auth A]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	ATP-binding cassette sub-family D member 3	ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity transporter activity transmembrane transporter activity ATP-dependent activity long-chain fatty acid transmembrane transporter activity lipid transmembrane transporter activity fatty acid transmembrane transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity binding adenyl ribonucleotide binding ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity transporter activity transmembrane transporter activity ATP-dependent activity long-chain fatty acid transmembrane transporter activity lipid transmembrane transporter activity fatty acid transmembrane transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity hydrolase activity, acting on ester bonds thiolester hydrolase activity deacylase activity hydrolase activity fatty acyl-CoA hydrolase activity catalytic activity acyl-CoA hydrolase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides	response to stimulus response to chemical response to xenobiotic stimulus fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process response to stimulus response to chemical response to xenobiotic stimulus fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid oxidation small molecule catabolic process lipid metabolic process cellular component organization peroxisome organization organelle organization cellular component organization or biogenesis organic anion transport carboxylic acid transport transport lipid localization bile acid and bile salt transport lipid transport organic hydroxy compound transport establishment of localization organic acid transport localization monocarboxylic acid transport macromolecule localization cellular localization carboxylic acid transmembrane transport peroxisomal membrane transport fatty acid transmembrane transport intercellular transport fatty acid transport establishment of localization in cell long-chain fatty acid transport long-chain fatty acid import into peroxisome intracellular lipid transport intracellular transport peroxisomal transport transmembrane transport bile acid biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process steroid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process bile acid metabolic process biosynthetic process lipid biosynthetic process fatty acid biosynthetic process very long-chain fatty acid metabolic process very long-chain fatty acid catabolic process long-chain fatty acid metabolic process phytanic acid metabolic process methyl-branched fatty acid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol peroxisome microbody microbody membrane bounding membrane of organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol peroxisome microbody microbody membrane bounding membrane of organelle peroxisomal membrane organelle membrane peroxisomal matrix membrane-enclosed lumen intracellular organelle lumen organelle lumen microbody lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A [auth B], B [auth A]	IPR003593	AAA+ ATPase domain	Domain
A [auth B], B [auth A]	IPR011527	ABC transporter type 1, transmembrane domain	Domain
A [auth B], B [auth A]	IPR050835	ATP-binding cassette sub-family D	Family
A [auth B], B [auth A]	IPR005283	Peroxysomal long chain fatty acyl transporter	Family
A [auth B], B [auth A]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth B], B [auth A]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A [auth B], B [auth A]	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth A]	Pharos: P28288	Zellweger spectrum disorders congenital bile acid synthesis defect 5 colorectal cancer malignant ependymoma oligodendroglioma pancreatic ductal adenocarcinoma Pick disease psoriasis adenoma astrocytic tumor breast cancer colorectal carcinoma dermatomyositis glioblastoma large cell medulloblastoma Zellweger spectrum disorders congenital bile acid synthesis defect 5 colorectal cancer malignant ependymoma oligodendroglioma pancreatic ductal adenocarcinoma Pick disease psoriasis adenoma astrocytic tumor breast cancer colorectal carcinoma dermatomyositis glioblastoma large cell medulloblastoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pilocytic astrocytoma ulcerative colitis adrenoleukodystrophy Zellweger-Like Syndrome atypical teratoid rhabdoid tumor breast carcinoma gastric cancer interstitial cystitis lymphoplasmacytic lymphoma medulloblastoma ovarian cancer peroxisomal disease progressive supranuclear palsy Alzheimer disease gastric carcinoma invasive ductal breast carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.