Annotations: 8YM2

Crystal structure of AIDA-1 PTB domain in complex with SynGAP NPxF motif

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GTP_EFTU	e8ym2A01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: GTP_EFTU	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00640	Phosphotyrosine interaction domain (PTB/PID) (PID)	Phosphotyrosine interaction domain (PTB/PID)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Ras/Rap GTPase-activating protein SynGAP	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity SH3 domain binding protein binding binding protein domain specific binding kinase binding enzyme binding protein kinase binding	biological regulation regulation of synapse structure or activity regulation of biological quality developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of synapse structure or activity regulation of biological quality developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication cellular process signal transduction regulation of MAPK cascade intracellular signaling cassette MAPK cascade small GTPase-mediated signal transduction negative regulation of signaling regulation of small GTPase mediated signal transduction negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of cell communication regulation of Ras protein signal transduction negative regulation of cellular process negative regulation of response to stimulus Ras protein signal transduction negative regulation of small GTPase mediated signal transduction negative regulation of signal transduction negative regulation of Ras protein signal transduction response to light stimulus system process learning learning or memory nervous system process visual learning visual behavior cognition associative learning behavior response to radiation response to abiotic stimulus neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of neuron apoptotic process regulation of neuronal synaptic plasticity regulation of synaptic plasticity trans-synaptic signaling regulation of long-term neuronal synaptic plasticity modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development cellular component organization generation of neurons neurogenesis neuron differentiation dendrite development cell differentiation neuron development cellular component organization or biogenesis system development axonogenesis regulation of cell differentiation regulation of neurogenesis regulation of cell development cell projection morphogenesis neuron projection morphogenesis negative regulation of cellular component organization regulation of cell projection organization negative regulation of axonogenesis negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process plasma membrane bounded cell projection morphogenesis cell morphogenesis regulation of nervous system development negative regulation of neurogenesis regulation of axonogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of multicellular organismal development negative regulation of developmental process axon development negative regulation of neuron projection development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis negative regulation of cell development regulation of plasma membrane bounded cell projection organization localization cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane maintenance of synapse structure postsynapse organization cellular component maintenance cell junction maintenance organelle organization cell junction organization maintenance of postsynaptic specialization structure postsynaptic density organization synapse organization postsynaptic specialization organization	cellular anatomical structure membrane cell periphery plasma membrane synapse cell junction glutamatergic synapse somatodendritic compartment cell projection dendrite dendritic tree neuron projection dendritic shaft plasma membrane bounded cell projection cellular anatomical structure membrane cell periphery plasma membrane synapse cell junction glutamatergic synapse somatodendritic compartment cell projection dendrite dendritic tree neuron projection dendritic shaft plasma membrane bounded cell projection postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle asymmetric synapse postsynaptic density, intracellular component intracellular anatomical structure intracellular membraneless organelle postsynaptic specialization, intracellular component intracellular organelle membraneless organelle
A	Ankyrin repeat and sterile alpha motif domain-containing protein 1B	protein binding binding signaling receptor binding ephrin receptor binding	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular process signal transduction enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway cell-cell signaling cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular process signal transduction enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway cell-cell signaling postsynaptic signal transduction synaptic signaling postsynapse to nucleus signaling pathway localization receptor localization to synapse trans-synaptic signaling multicellular organismal process system process nervous system process chemical synaptic transmission, postsynaptic chemical synaptic transmission anterograde trans-synaptic signaling regulation of synaptic plasticity by receptor localization to synapse	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol presynapse presynaptic cytosol intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol presynapse presynaptic cytosol synapse cell junction cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen glutamatergic synapse neuron to neuron synapse hippocampal mossy fiber to CA3 synapse neuron spine neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse dendrite dendritic tree postsynaptic density postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse postsynaptic density, intracellular component postsynaptic specialization, intracellular component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR001849	Pleckstrin homology domain	Domain
B	IPR021887	Disabled homolog 2-interacting protein, C-terminal domain	Domain
B	IPR000008	C2 domain	Domain
B	IPR011993	PH-like domain superfamily	Homologous Superfamily
B	IPR039360	Ras GTPase-activating protein	Family
B	IPR008936	Rho GTPase activation protein	Homologous Superfamily
B	IPR001936	Ras GTPase-activating domain	Domain
B	IPR057606	Ras/Rap GTPase-activating protein SynGAP-like, PH domain	Domain
B	IPR023152	Ras GTPase-activating protein, conserved site	Conserved Site
B	IPR037779	SynGAP, PH domain	Domain
B	IPR035892	C2 domain superfamily	Homologous Superfamily
A	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A	IPR041880	Ankyrin repeat and SAM domain-containing protein 1, SAM repeat 1	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR002110	Ankyrin repeat	Repeat
A	IPR006020	PTB/PI domain	Domain
A	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A	IPR001660	Sterile alpha motif domain	Domain
A	IPR033635	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Family
A	IPR041882	Ankyrin repeat and SAM domain-containing protein 1, SAM repeat 2	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8YM2 | pdb_00008ym2

Crystal structure of AIDA-1 PTB domain in complex with SynGAP NPxF motif

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage