8VWJ | pdb_00008vwj

The base complex of the AcMNPV baculovirus nucleocapsid (Class 2, localised reconstruction)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
JA [auth k], P	PF05152	Protein of unknown function (DUF705) (DUF705)	Protein of unknown function (DUF705)	-	Family
IA [auth j], O	PF04913	Baculovirus Y142 protein (Baculo_Y142)	Baculovirus Y142 protein	-	Family
HA [auth i], N	PF05054	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein (AcMNPV_Ac109)	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein	-	Family
EA [auth f], FA [auth g], K, L, R, EA [auth f], FA [auth g], K, L, R, T	PF05152	Protein of unknown function (DUF705) (DUF705)	Protein of unknown function (DUF705)	-	Family
DA [auth e], GA [auth h], J, M, Q, DA [auth e], GA [auth h], J, M, Q, S	PF04913	Baculovirus Y142 protein (Baculo_Y142)	Baculovirus Y142 protein	-	Family
AA [auth b], BA [auth c], CA [auth d], G, H, AA [auth b], BA [auth c], CA [auth d], G, H, I	PF05054	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein (AcMNPV_Ac109)	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
JA [auth k], P	38K (AC98)	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component host cell cytoplasm
IA [auth j], O	Protein AC142	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral nucleocapsid viral capsid virion component host cell cytoplasm
HA [auth i], N	Protein AC109	-	virion assembly viral process viral capsid assembly viral life cycle nuclear capsid assembly biological process involved in interspecies interaction between organisms intracellular transport of virus transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm
EA [auth f], FA [auth g], K, L, R, EA [auth f], FA [auth g], K, L, R, T	Protein C42	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component
DA [auth e], GA [auth h], J, M, Q, DA [auth e], GA [auth h], J, M, Q, S	Occlusion-derived virus envelope protein E27	-	symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host cell cycle progression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	virion component viral membrane viral envelope cellular anatomical structure membrane virion membrane
AA [auth b], BA [auth c], CA [auth d], G, H, AA [auth b], BA [auth c], CA [auth d], G, H, I	Capsid-associated protein VP80	DNA binding binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity	exit of virus from host cell nucleus by nuclear egress exit from host cell biological process involved in interspecies interaction between organisms viral process exit of virus from host cell nucleus biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A, B, C, D, E, A, B, C, D, E, F, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth a]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host cell nuclear matrix host intracellular part host cell nucleus other organism part host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
JA [auth k], P	IPR007827	Protein of unknown function DUF694	Family
JA [auth k], P	IPR036412	HAD-like superfamily	Homologous Superfamily
JA [auth k], P	IPR023214	HAD superfamily	Homologous Superfamily
JA [auth k], P	IPR010033	HAD-superfamily phosphatase, subfamily IIIC	Domain
IA [auth j], O	IPR006997	Baculovirus Y142 protein	Family
HA [auth i], N	IPR007748	Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf109	Family
EA [auth f], FA [auth g], K, L, R, EA [auth f], FA [auth g], K, L, R, T	IPR008562	Autographa californica nuclear polyhedrosis virus (AcMNPV), C42	Family
DA [auth e], GA [auth h], J, M, Q, DA [auth e], GA [auth h], J, M, Q, S	IPR007978	Baculovirus occlusion-derived virus envelope EC27	Family
AA [auth b], BA [auth c], CA [auth d], G, H, AA [auth b], BA [auth c], CA [auth d], G, H, I	IPR009893	Nucleopolyhedrovirus capsid P80/P87	Family
A, B, C, D, E, A, B, C, D, E, F, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth a]	IPR007589	Baculovirus major capsid protein VP39	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.