8QI7
Cryo-EM Structure of Human Serine Hydroxymethyltransferase, isoform 2 (SHMT2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PLP-dependent transferases | 8036728 | 3000954 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | PLP-dependent transferases | 8036728 | 3000954 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | PLP-dependent transferases | 8036728 | 3000954 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | PLP-dependent transferases | 8036728 | 3000954 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00464 | e8qi7A2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
A | PF00464 | e8qi7A1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
B [auth D] | PF00464 | e8qi7D2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
B [auth D] | PF00464 | e8qi7D1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
C [auth B] | PF00464 | e8qi7B1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
C [auth B] | PF00464 | e8qi7B2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
D [auth C] | PF00464 | e8qi7C1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
D [auth C] | PF00464 | e8qi7C2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth D], C [auth B], D [auth C] | IPR019798 | Serine hydroxymethyltransferase, pyridoxal phosphate binding site | Binding Site |
A, B [auth D], C [auth B], D [auth C] | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily |
A, B [auth D], C [auth B], D [auth C] | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |
A, B [auth D], C [auth B], D [auth C] | IPR039429 | Serine hydroxymethyltransferase-like domain | Domain |
A, B [auth D], C [auth B], D [auth C] | IPR001085 | Serine hydroxymethyltransferase | Family |
A, B [auth D], C [auth B], D [auth C] | IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A, B [auth D], C [auth B], D [auth C] | LLP | Parent Component: LYS :  AA0119 :  N6-pyridoxal phosphate-L-lysine MOD:00128 |