8OUY | pdb_00008ouy

Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) complex, 3.4 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Helix-hairpin-helix tandem	8056646	3000163	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF08423	Rad51 (Rad51)	Rad51	Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.	Domain
C	PF08423	Rad51 (Rad51)	Rad51	Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.	Domain
B	PF08423	Rad51 (Rad51)	Rad51	Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.	Domain
A	PF26169	XRCC3/RpoA-like, helix-hairpin-helix domain (HHH_XRCC3_RpoA)	XRCC3/RpoA-like, helix-hairpin-helix domain	This domain is found at the N-terminal end of human DNA repair protein XRCC3 and similar proteins, and at the C-terminal end of plant DNA-directed RNA polymerase subunit alpha (RpoA). XRCC3 is involved in the homologous recombination repair pathway o ...	This domain is found at the N-terminal end of human DNA repair protein XRCC3 and similar proteins, and at the C-terminal end of plant DNA-directed RNA polymerase subunit alpha (RpoA). XRCC3 is involved in the homologous recombination repair pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions. It is part of the RAD51 paralogue protein complex CX3 [5-7]. This domain is predicted to adopt an helix-hairpin-helix (HHH) fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	DNA repair protein XRCC2	ATP-dependent activity, acting on DNA DNA damage sensor activity molecular sensor activity catalytic activity, acting on DNA ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid molecular function regulator activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding ATP-dependent activity, acting on DNA DNA damage sensor activity molecular sensor activity catalytic activity, acting on DNA ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid molecular function regulator activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding	cellular process cell cycle mitotic cell cycle developmental process neurogenesis multicellular organism development multicellular organismal process cellular developmental process cell differentiation anatomical structure development nervous system development system development somitogenesis epithelium development cellular process cell cycle mitotic cell cycle developmental process neurogenesis multicellular organism development multicellular organismal process cellular developmental process cell differentiation anatomical structure development nervous system development system development somitogenesis epithelium development chordate embryonic development segmentation anterior/posterior pattern specification pattern specification process embryo development tissue development regionalization anatomical structure morphogenesis embryo development ending in birth or egg hatching somite development anatomical structure formation involved in morphogenesis response to X-ray response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus regulation of biological process regulation of cellular process regulation of apoptotic process biological regulation regulation of programmed cell death cell death fibroblast apoptotic process apoptotic process programmed cell death regulation of fibroblast apoptotic process neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death negative regulation of biological process negative regulation of apoptotic process negative regulation of cellular process regulation of neuron apoptotic process in utero embryonic development nucleobase-containing compound metabolic process DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process DNA strand invasion nucleic acid metabolic process cellular response to stimulus double-strand break repair cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair microtubule organizing center organization microtubule cytoskeleton organization cellular component organization organelle organization centrosome cycle microtubule-based process cellular component organization or biogenesis cytoskeleton organization cell cycle process response to gamma radiation positive regulation of nervous system development regulation of developmental process positive regulation of biological process cell development regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of developmental process positive regulation of cell differentiation positive regulation of neurogenesis regulation of multicellular organismal process positive regulation of cellular process regulation of multicellular organismal development positive regulation of cell development positive regulation of multicellular organismal process multicellular organism growth developmental growth growth sexual reproduction reproductive process meiotic cell cycle	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA recombinase mediator complex centrosome microtubule organizing center cytoskeleton membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA recombinase mediator complex centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen replication fork chromosome
C	DNA repair protein RAD51 homolog 4	ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity ATP-dependent activity DNA damage sensor activity molecular sensor activity ATP-dependent DNA damage sensor activity molecular function regulator activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity ATP-dependent activity DNA damage sensor activity molecular sensor activity ATP-dependent DNA damage sensor activity molecular function regulator activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding cytoskeletal protein binding protein binding gamma-tubulin binding tubulin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides single-stranded DNA binding	homologous recombination sexual reproduction reproductive process meiotic cell cycle process nucleobase-containing compound metabolic process cellular component organization meiosis I meiotic nuclear division cell cycle cellular component organization or biogenesis reciprocal homologous recombination cell cycle process DNA recombination meiotic cell cycle homologous recombination sexual reproduction reproductive process meiotic cell cycle process nucleobase-containing compound metabolic process cellular component organization meiosis I meiotic nuclear division cell cycle cellular component organization or biogenesis reciprocal homologous recombination cell cycle process DNA recombination meiotic cell cycle organelle fission primary metabolic process DNA metabolic process nucleic acid metabolic process reciprocal meiotic recombination nuclear division organelle organization meiosis I cell cycle process metabolic process cellular process macromolecule metabolic process mitotic recombination telomere organization chromosome organization telomere maintenance telomere maintenance via recombination cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress interstrand cross-link repair DNA repair DNA strand invasion double-strand break repair recombinational repair double-strand break repair via homologous recombination regulation of biological process regulation of cellular process biological regulation regulation of cell cycle	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA recombinase mediator complex centrosome microtubule organizing center cytoskeleton membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA recombinase mediator complex centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen replication fork chromosome chromosome, telomeric region chromosomal region
B	DNA repair protein RAD51 homolog 3	ATP-dependent activity, acting on DNA DNA damage sensor activity molecular sensor activity catalytic activity, acting on DNA ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid molecular function regulator activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding ATP-dependent activity, acting on DNA DNA damage sensor activity molecular sensor activity catalytic activity, acting on DNA ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid molecular function regulator activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding endonuclease activity hydrolase activity crossover junction DNA endonuclease activity DNA nuclease activity DNA endonuclease activity DNA endonuclease activity, producing 3'-phosphomonoesters hydrolase activity, acting on ester bonds nuclease activity	cellular response to stimulus sexual reproduction response to stimulus reproductive process meiotic cell cycle process cellular component organization cellular component biogenesis protein-DNA complex organization nucleobase-containing compound metabolic process DNA recombinase assembly cellular component assembly cellular response to stress response to stress protein-containing complex assembly DNA repair complex assembly cellular response to stimulus sexual reproduction response to stimulus reproductive process meiotic cell cycle process cellular component organization cellular component biogenesis protein-DNA complex organization nucleobase-containing compound metabolic process DNA recombinase assembly cellular component assembly cellular response to stress response to stress protein-containing complex assembly DNA repair complex assembly recombinational repair cell cycle cellular component organization or biogenesis double-strand break repair via homologous recombination cell cycle process DNA repair double-strand break repair protein-containing complex organization meiotic cell cycle DNA recombination protein-DNA complex assembly primary metabolic process DNA metabolic process meiotic DNA recombinase assembly double-strand break repair via synthesis-dependent strand annealing nucleic acid metabolic process meiosis I cell cycle process DNA damage response cellular process metabolic process macromolecule metabolic process developmental process spermatogenesis multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation organelle organization female meiosis sister chromatid cohesion chromosome organization sister chromatid cohesion meiotic sister chromatid cohesion homologous recombination meiosis I meiotic nuclear division reciprocal homologous recombination organelle fission reciprocal meiotic recombination nuclear division mitotic recombination telomere organization telomere maintenance telomere maintenance via recombination male meiosis I male meiotic nuclear division regulation of cell cycle phase transition regulation of cellular process G2/M transition of mitotic cell cycle positive regulation of biological process cell cycle phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle regulation of cell cycle positive regulation of cellular process cell cycle G2/M phase transition positive regulation of G2/M transition of mitotic cell cycle regulation of biological process regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process biological regulation regulation of cell cycle G2/M phase transition positive regulation of cell cycle G2/M phase transition positive regulation of cell cycle regulation of mitotic cell cycle phase transition mitotic cell cycle process positive regulation of cell cycle phase transition mitotic cell cycle phase transition	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell junction protein-containing complex nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex DNA recombinase mediator complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell junction protein-containing complex nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex DNA recombinase mediator complex cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle replication fork intracellular membraneless organelle chromosome perinuclear region of cytoplasm Rad51C-XRCC3 complex
A	DNA repair protein RAD51 homolog 2	ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity ATP-dependent activity DNA damage sensor activity molecular sensor activity ATP-dependent DNA damage sensor activity molecular function regulator activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity ATP-dependent activity DNA damage sensor activity molecular sensor activity ATP-dependent DNA damage sensor activity molecular function regulator activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding double-stranded DNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides single-stranded DNA binding	homologous recombination sexual reproduction reproductive process meiotic cell cycle process nucleobase-containing compound metabolic process cellular component organization meiosis I meiotic nuclear division cell cycle cellular component organization or biogenesis reciprocal homologous recombination cell cycle process DNA recombination meiotic cell cycle homologous recombination sexual reproduction reproductive process meiotic cell cycle process nucleobase-containing compound metabolic process cellular component organization meiosis I meiotic nuclear division cell cycle cellular component organization or biogenesis reciprocal homologous recombination cell cycle process DNA recombination meiotic cell cycle organelle fission primary metabolic process DNA metabolic process nucleic acid metabolic process reciprocal meiotic recombination nuclear division organelle organization meiosis I cell cycle process metabolic process cellular process macromolecule metabolic process developmental process multicellular organismal process developmental growth chordate embryonic development growth embryo development in utero embryonic development multicellular organism development embryo development ending in birth or egg hatching anatomical structure development blastocyst growth blastocyst development regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process positive regulation of cellular process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair regulation of cell cycle phase transition G2/M transition of mitotic cell cycle cell cycle phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle regulation of cell cycle cell cycle G2/M phase transition positive regulation of G2/M transition of mitotic cell cycle regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process regulation of cell cycle G2/M phase transition positive regulation of cell cycle G2/M phase transition positive regulation of cell cycle regulation of mitotic cell cycle phase transition mitotic cell cycle process positive regulation of cell cycle phase transition mitotic cell cycle phase transition epithelium development somite development tissue development	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA recombinase mediator complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus Rad51B-Rad51C-Rad51D-XRCC2 complex nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA recombinase mediator complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle replication fork intracellular membraneless organelle chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR030547	DNA repair protein XRCC2	Family
D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	Domain
D	IPR013632	Rad51-like, C-terminal	Domain
C	IPR051988	Homologous Recombination Repair RAD51 Paralog	Family
C	IPR003593	AAA+ ATPase domain	Domain
C	IPR047323	DNA repair protein RAD51 homolog 4, C-terminal	Domain
C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C	IPR016467	DNA recombination and repair protein, RecA-like	Family
C	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	Domain
C	IPR013632	Rad51-like, C-terminal	Domain
C	IPR048943	RAD51D, N-terminal domain	Domain
B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B	IPR016467	DNA recombination and repair protein, RecA-like	Family
B	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	Domain
B	IPR013632	Rad51-like, C-terminal	Domain
B	IPR052093	Homologous Recombination Repair Mediator	Family
A	IPR030548	DNA repair protein RAD51 homologue 2	Family
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR016467	DNA recombination and repair protein, RecA-like	Family
A	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	Domain
A	IPR013632	Rad51-like, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D	Pharos: O43543	Fanconi anemia Fanconi anemia complementation group U breast carcinoma breast cancer aplastic anemia inherited aplastic anemia Malignant neoplasm of breast ovarian cancer astrocytic tumor cancer hematopoietic and lymphoid system neoplasm lung adenocarcinoma non-small cell lung carcinoma primary ovarian failure hereditary breast carcinoma Fanconi anemia Fanconi anemia complementation group U breast carcinoma breast cancer aplastic anemia inherited aplastic anemia Malignant neoplasm of breast ovarian cancer astrocytic tumor cancer hematopoietic and lymphoid system neoplasm lung adenocarcinoma non-small cell lung carcinoma primary ovarian failure hereditary breast carcinoma malignant ependymoma oligodendroglioma
C	Pharos: O75771	breast-ovarian cancer, familial, susceptibility to, 4 hereditary breast ovarian cancer syndrome Chromosome Deletion ovarian cancer hereditary breast carcinoma ovarian neoplasm Sjogren syndrome cancer osteosarcoma malignant mesothelioma rheumatoid arthritis
B	Pharos: O43502	Fanconi anemia Fanconi anemia complementation group O ovarian cancer breast-ovarian cancer, familial, susceptibility to, 3 hereditary breast ovarian cancer syndrome breast carcinoma breast cancer Mammary Neoplasms nasopharyngeal carcinoma ovarian neoplasm tuberculosis acute myeloid leukemia cancer aplastic anemia congenital anemia Fanconi anemia Fanconi anemia complementation group O ovarian cancer breast-ovarian cancer, familial, susceptibility to, 3 hereditary breast ovarian cancer syndrome breast carcinoma breast cancer Mammary Neoplasms nasopharyngeal carcinoma ovarian neoplasm tuberculosis acute myeloid leukemia cancer aplastic anemia congenital anemia esophageal atresia/tracheoesophageal fistula hematopoietic and lymphoid system neoplasm inherited aplastic anemia medulloblastoma hereditary breast carcinoma intellectual disability
A	Pharos: O15315	breast carcinoma male breast carcinoma primary biliary cholangitis Organic Mental Disorders, Substance-Induced rheumatoid arthritis substance dependence age-related macular degeneration wet macular degeneration inflammatory bowel disease malignant ependymoma osteosarcoma prostate carcinoma substance abuse allergic rhinitis systemic lupus erythematosus breast carcinoma male breast carcinoma primary biliary cholangitis Organic Mental Disorders, Substance-Induced rheumatoid arthritis substance dependence age-related macular degeneration wet macular degeneration inflammatory bowel disease malignant ependymoma osteosarcoma prostate carcinoma substance abuse allergic rhinitis systemic lupus erythematosus celiac disease drug dependence estrogen-receptor negative breast cancer juvenile idiopathic arthritis malignant mesothelioma psoriasis substance-related disorder tuberculosis breast cancer Crohn disease Hashimoto thyroiditis