28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| JA [auth Aj] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8104445 | 3000334 | SCOP2B (2022-06-29) |
| IA [auth Ai] | SCOP2B Superfamily | Translational machinery components | 8096616 | 3000571 | SCOP2B (2022-06-29) |
| DA [auth Ab] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063848 | 3001397 | SCOP2B (2022-06-29) |
| AA [auth AY] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S31-like | 8090912 | 3002471 | SCOP2B (2022-06-29) |
| T [auth AR] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S22-like | 8096620 | 3002074 | SCOP2B (2022-06-29) |
| S [auth AQ] | SCOP2B Superfamily | Ribosomal protein S21 | 8083456 | 3002159 | SCOP2B (2022-06-29) |
| M [auth AK] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052589 | 3000068 | SCOP2B (2022-06-29) |
| L [auth AJ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8096284 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth AF] | e8oipAF1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| G [auth AE] | e8oipAE1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| F [auth AD] | e8oipAD1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| E [auth AC] | e8oipAC1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| D [auth AB] | e8oipAB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| JA [auth Aj] | e8oipAj1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| IA [auth Ai] | e8oipAi1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| HA [auth Ag] | e8oipAg1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| FA [auth Ad] | e8oipAd1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| EA [auth Ac] | e8oipAc1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| DA [auth Ab] | e8oipAb1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| BA [auth AZ] | e8oipAZ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| Z [auth AX] | e8oipAX1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| Y [auth AW] | e8oipAW1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| X [auth AV] | e8oipAV1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| W [auth AU] | e8oipAU1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| V [auth AT] | e8oipAT1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| U [auth AS] | e8oipAS1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| T [auth AR] | e8oipAR1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| S [auth AQ] | e8oipAQ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| R [auth AP] | e8oipAP1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| Q [auth AO] | e8oipAO1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| P [auth AN] | e8oipAN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| O [auth AM] | e8oipAM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| N [auth AL] | e8oipAL1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| M [auth AK] | e8oipAK1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| L [auth AJ] | e8oipAJ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) | |
| J [auth AH] | e8oipAH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Pkinase, ABC1 | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| G [auth AE] | PF22330 | Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR) | Small ribosomal subunit protein mS39, PPR | - | Repeat |
| F [auth AD] | PF21251 | Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N) | Small ribosomal subunit protein uS5m, N-terminal | This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ... | Domain |
| E [auth AC] | PF14955 | Mitochondrial ribosome subunit S24 (MRP-S24) | Mitochondrial ribosome subunit S24 | - | Family |
| E [auth AC] | PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain |
| D [auth AB] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
| D [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| C [auth AA] | PF03462 | PCRF domain (PCRF) | PCRF domain | This domain is found in peptide chain release factors. | Domain |
| C [auth AA] | PF00472 | RF-1 domain (RF-1) | RF-1 domain | This domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ... | Domain |
| BA [auth AZ] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
| Z [auth AX] | PF10236 | Mitochondrial ribosomal death-associated protein 3 (DAP3) | Mitochondrial ribosomal death-associated protein 3 | - | Family |
| V [auth AT] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
| U [auth AS] | PF10484 | Mitochondrial ribosomal protein S23 (MRP-S23) | Mitochondrial ribosomal protein S23 | - | Family |
| T [auth AR] | PF10245 | Mitochondrial 28S ribosomal protein S22 (MRP-S22) | Mitochondrial 28S ribosomal protein S22 | - | Family |
| S [auth AQ] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
| R [auth AP] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| Q [auth AO] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| P [auth AN] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| N [auth AL] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| M [auth AK] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| L [auth AJ] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
| J [auth AH] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
| Chains | Drug Target   | Associated Disease |
|---|---|---|
| CA [auth Aa] | :  O75570 |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| I [auth AG] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| IA [auth Ai] | 5F0 | :  AA0021 , AA0566 |
| EA [auth Ac] | AYA | Parent Component: ALA :  AA0021 , AA0566 |
| C [auth AA] | 5MC | Parent Component: C :  AA0021 , AA0566 |
| C [auth AA] | 5MU | Parent Component: U :  AA0021 , AA0566 |
| C [auth AA] | B8T | Parent Component: C :  AA0021 , AA0566 |
| C [auth AA] | MA6 | Parent Component: A :  AA0021 , AA0566 |
| S [auth AQ] | AYA | Parent Component: ALA :  AA0021 , AA0566 |














