Annotations: 8J2P

Crystal structure of PML B-box2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Type 2 solute binding protein-like	8058187	3000083	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	Type 2 solute binding protein-like	8058187	3000083	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	V-set	e8j2pA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
A [auth E]	B12-binding	e8j2pE02	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: B12-binding	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth A]	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth A]	Maltose/maltodextrin-binding periplasmic protein,Protein PML	transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding cation binding transition metal ion binding ion binding metal ion binding cobalt ion binding small molecule binding transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding cation binding transition metal ion binding ion binding metal ion binding cobalt ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity transferase activity catalytic activity SUMO transferase activity SUMO binding protein binding ubiquitin-like protein binding molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding protein heterodimerization activity protein dimerization activity transcription coactivator activity transcription regulator activity transcription coregulator activity protein homodimerization activity SMAD binding zinc ion binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility locomotion localization transport carbohydrate transport oligosaccharide transport disaccharide transport establishment of localization maltose transport polysaccharide localization dextrin transport macromolecule localization maltodextrin transmembrane transport polysaccharide transport response to disaccharide response to oxygen-containing compound detection of maltose stimulus detection of stimulus response to carbohydrate detection of chemical stimulus detection of disaccharide stimulus response to maltose detection of carbohydrate stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction regulation of signal transduction by p53 class mediator positive regulation of signal transduction by p53 class mediator signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction signal transduction by p53 class mediator regulation of response to stimulus regulation of cell communication positive regulation of signaling cell adhesion regulation of cell adhesion inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of protein stability regulation of biological quality protein stabilization catabolic process negative regulation of biological process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process modification-dependent macromolecule catabolic process negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of ubiquitin-dependent protein catabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process modification-dependent protein catabolic process metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process apoptotic process cell death programmed cell death biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus peptidyl-lysine modification protein sumoylation macromolecule modification protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth cellular component organization or biogenesis ameboidal-type cell migration fibroblast migration cellular senescence regulation of biosynthetic process rhythmic process circadian regulation of gene expression circadian rhythm gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process nuclear body organization nucleus organization organelle organization PML body organization response to light stimulus entrainment of circadian clock regulation of circadian rhythm photoperiodism response to radiation response to abiotic stimulus entrainment of circadian clock by photoperiod RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription establishment of protein localization protein targeting response to decreased oxygen levels response to hypoxia response to oxygen levels regulation of defense response regulation of response to biotic stimulus regulation of response to external stimulus regulation of defense response to virus defense response to virus regulation of response to stress positive regulation of defense response to virus by host regulation of defense response to virus by host response to virus positive regulation of organelle organization regulation of telomere maintenance positive regulation of cellular component organization telomere organization positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of telomere maintenance chromosome organization regulation of chromosome organization DNA metabolic process regulation of organelle organization positive regulation of chromosome organization telomere maintenance positive regulation of DNA metabolic process regulation of DNA metabolic process regulation of localization regulation of protein localization positive regulation of protein localization to chromosome, telomeric region protein localization to chromosome, telomeric region regulation of protein localization to chromosome, telomeric region protein localization to chromosome protein localization to organelle positive regulation of protein localization intracellular protein localization negative regulation of translation in response to stress protein biosynthetic process post-transcriptional regulation of gene expression translational initiation regulation of translational initiation negative regulation of gene expression negative regulation of macromolecule biosynthetic process negative regulation of translation in response to oxidative stress cellular response to oxidative stress cellular response to chemical stress negative regulation of translation regulation of translation in response to stress negative regulation of translational initiation in response to stress negative regulation of translational initiation translation regulation of translation in response to oxidative stress response to oxidative stress negative regulation of biosynthetic process regulation of translation regulation of translational initiation in response to stress negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of RNA metabolic process cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell maintenance of protein location in cell maintenance of protein localization in organelle fibroblast proliferation cell population proliferation positive regulation of cell population proliferation regulation of fibroblast proliferation regulation of cell population proliferation positive regulation of fibroblast proliferation multicellular organismal process interleukin-1 production regulation of interleukin-1 beta production negative regulation of interleukin-1 beta production negative regulation of interleukin-1 production regulation of cytokine production cytokine production regulation of multicellular organismal process regulation of interleukin-1 production negative regulation of cytokine production interleukin-1 beta production negative regulation of multicellular organismal process suppression of viral release by host regulation of programmed cell death extrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of programmed cell death cell surface receptor signaling pathway regulation of apoptotic process positive regulation of extrinsic apoptotic signaling pathway positive regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of apoptotic signaling pathway regulation of double-strand break repair regulation of cellular response to stress DNA repair double-strand break repair regulation of DNA repair response to peptide response to cytokine proteasomal protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process negative regulation of telomere maintenance negative regulation of telomere maintenance via telomerase regulation of DNA biosynthetic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening negative regulation of chromosome organization negative regulation of cellular component organization regulation of telomere maintenance via telomere lengthening DNA biosynthetic process negative regulation of DNA biosynthetic process negative regulation of telomere maintenance via telomere lengthening telomere maintenance via telomerase regulation of telomere maintenance via telomerase negative regulation of organelle organization negative regulation of DNA metabolic process intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway oncogene-induced cell senescence antiviral innate immune response negative regulation of cell population proliferation regulation of calcium ion transport regulation of calcium ion transport into cytosol monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport monoatomic ion transport monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of transport regulation of monoatomic ion transport positive regulation of cytosolic calcium ion concentration transmembrane transport regulation of transmembrane transport regulation of cellular localization regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport calcium ion transport into cytosol DNA damage response, signal transduction by p53 class mediator signal transduction in response to DNA damage intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator intrinsic apoptotic signaling pathway by p53 class mediator regulation of developmental process angiogenesis regulation of vasculature development multicellular organism development tube morphogenesis anatomical structure development regulation of anatomical structure morphogenesis system development blood vessel development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development anatomical structure morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis animal gross anatomical part developmental process cell cycle regulation of cell cycle apoptotic process involved in morphogenesis mammary gland morphogenesis mammary gland development gland development positive regulation of apoptotic process involved in mammary gland involution apoptotic process involved in development positive regulation of developmental process gland morphogenesis positive regulation of apoptotic process involved in morphogenesis mammary gland involution animal organ morphogenesis positive regulation of apoptotic process involved in development apoptotic process involved in mammary gland involution animal organ development regulation of apoptotic process involved in development tissue remodeling negative regulation of cell cycle negative regulation of mitotic cell cycle mitotic cell cycle regulation of mitotic cell cycle chromatin organization chromatin remodeling	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex extracellular region ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex extracellular region periplasmic space outer membrane-bounded periplasmic space cell envelope membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cytoplasm cytosol membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix nucleolus nucleoplasm organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane endosome membrane early endosome endosome intracellular vesicle early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane vesicle nuclear body PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth A]	IPR006061	Solute-binding family 1, conserved site	Conserved Site
A [auth E], B [auth A]	IPR006060	Maltose/Cyclodextrin ABC transporter, substrate-binding protein	Family
A [auth E], B [auth A]	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A [auth E], B [auth A]	IPR047153	TRIM45/56/19-like	Family
A [auth E], B [auth A]	IPR057617	PML, C-terminal domain	Domain
A [auth E], B [auth A]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A [auth E], B [auth A]	IPR001841	Zinc finger, RING-type	Domain
A [auth E], B [auth A]	IPR021978	PML-like, coiled-coil	Domain
A [auth E], B [auth A]	IPR018957	Zinc finger, C3HC4 RING-type	Domain
A [auth E], B [auth A]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A [auth E], B [auth A]	IPR000315	B-box-type zinc finger	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth E], B [auth A]	: P29590	acute promyelocytic leukemia glioblastoma Stevens-Johnson syndrome bone Paget disease Neoplasms, Second Primary prostate cancer giant cell glioblastoma schizophrenia ovarian cancer acute myeloid leukemia heart disease large cell medulloblastoma medulloblastoma myeloid leukemia pancreatic intraductal papillary-mucinous neoplasm acute promyelocytic leukemia glioblastoma Stevens-Johnson syndrome bone Paget disease Neoplasms, Second Primary prostate cancer giant cell glioblastoma schizophrenia ovarian cancer acute myeloid leukemia heart disease large cell medulloblastoma medulloblastoma myeloid leukemia pancreatic intraductal papillary-mucinous neoplasm cancer ulcerative colitis exfoliation syndrome multiple sclerosis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atypical teratoid rhabdoid tumor toxic epidermal necrolysis cutaneous lupus erythematosus head and neck cancer malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.