Annotations: 8HFS

The structure of LcnA, LciA, and the man-PTS of Lactococcus lactis

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	V-set	e8hfsB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: V-set	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth Z], F, H [auth D]	PF03613	PTS system mannose/fructose/sorbose family IID component (EIID-AGA)	PTS system mannose/fructose/sorbose family IID component	-	Family
A [auth Y], E, G [auth C]	PF03609	PTS system sorbose-specific iic component (EII-Sor)	PTS system sorbose-specific iic component	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth A]	Bacteriocin lactococcin-A	-	defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part extracellular region
C [auth B]	Lactococcin-A immunity protein	-	metabolic process cellular process bacteriocin immunity toxin metabolic process secondary metabolic process	-
B [auth Z], F, H [auth D]	Mannose-specific PTS system, IID component	-	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane
A [auth Y], E, G [auth C]	Mannose-specific PTS system, IIC component	-	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth A]	IPR007464	Bacteriocin, class IId	Family
C [auth B]	IPR015046	Lactococcin-A immunity protein-like	Family
B [auth Z], F, H [auth D]	IPR050303	GatZ/KbaZ carbohydrate metabolism	Family
B [auth Z], F, H [auth D]	IPR004704	Phosphotransferase system, mannose/fructose/sorbose family IID component	Family
A [auth Y], E, G [auth C]	IPR050303	GatZ/KbaZ carbohydrate metabolism	Family
A [auth Y], E, G [auth C]	IPR004700	Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth Y], B [auth Z], D [auth A], E, F A [auth Y], B [auth Z], D [auth A], E, F, G [auth C], H [auth D]	OPM	Transmembrane	Alpha-helical polytopic	PTS system mannose/fructose/sorbose family	PTS system mannose/fructose/sorbose family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth Y], B [auth Z], D [auth A], E, F A [auth Y], B [auth Z], D [auth A], E, F, G [auth C], H [auth D]	PDBTM	Annotated as membrane protein by PDBTM

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