8EOI | pdb_00008eoi

Structure of a human EMC:human Cav1.2 channel complex in GDN detergent


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth F]SCOP2B SuperfamilyEMC6/GET2-like 8101858 3002721 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyYidC transmembrane domain-like 8101852 3002720 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth H]F_UNCLASSIFIEDe8eoiH1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: F_UNCLASSIFIEDECOD (1.6)
F [auth G]F_UNCLASSIFIEDe8eoiG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8eoiJ2 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8eoiJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth K]PF08763Voltage gated calcium channel IQ domain (Ca_chan_IQ)Voltage gated calcium channel IQ domainVoltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin [1]. ...Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin [1]. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Domain
I [auth K]PF16905Voltage-dependent L-type calcium channel, IQ-associated (GPHH)Voltage-dependent L-type calcium channel, IQ-associated- Family
I [auth K]PF00520Ion transport protein (Ion_trans)Ion transport protein- Family
H [auth I]PF21203ER membrane protein complex subunit 10 (ECM10)ER membrane protein complex subunit 10EMC10 is a component of the endoplasmic reticulum (ER) membrane protein complex (EMC), a conserved co- and post-translational insertase which enables the energy-independent insertion into ER membranes of newly synthesized membrane proteins [1-4]. It ...EMC10 is a component of the endoplasmic reticulum (ER) membrane protein complex (EMC), a conserved co- and post-translational insertase which enables the energy-independent insertion into ER membranes of newly synthesized membrane proteins [1-4]. It is involved in the co-translational insertion of multi-pass membrane proteins in which stop-transfer membrane-anchor sequences become ER membrane spanning helices. This complex controls the topology of multi-pass membrane proteins, such as G protein-coupled receptors [1,4]. This entry represents a conserved domain found in these proteins, which adopts a beta-sandwich fold.
Domain
G [auth H]PF03665Uncharacterised protein family (UPF0172) (UPF0172)Uncharacterised protein family (UPF0172)- Family
F [auth G]PF09430ER membrane protein complex subunit 7, beta-sandwich domain (EMC7_beta-sandw)ER membrane protein complex subunit 7, beta-sandwich domainThis is the beta-sandwich domain found in ER membrane protein complex subunit 7 (EMC7) [1,2], which is an integral membrane component of the EMC. EMC is widely conserved and involved in membrane protein biogenesis. It mediates the insertion into endo ...This is the beta-sandwich domain found in ER membrane protein complex subunit 7 (EMC7) [1,2], which is an integral membrane component of the EMC. EMC is widely conserved and involved in membrane protein biogenesis. It mediates the insertion into endoplasmic reticulum membranes of newly synthesized membrane proteins in an energy-independent manner, both post-translational insertions of tail-anchored proteins and co-translational insertion of multipass membrane proteins [3,4]. This entry includes UPF0620 protein C83.10 from S. pombe, an orthologue of animal EMC7. This domain is also found in nodal modulators, which have been identified as part of a protein complex that participates in the nodal signalling pathway during vertebrate development [5].
Domain
E [auth F]PF07019EMC6 (EMC6)EMC6- Family
D [auth E]PF10270Membrane magnesium transporter (MMgT)Membrane magnesium transporter- Family
PF01956Integral membrane protein EMC3/TMCO1-like (EMC3_TMCO1)Integral membrane protein EMC3/TMCO1-like- Family
PF22890EMC2 TPR-like repeat domain (TPR_EMC2)EMC2 TPR-like repeat domain- Repeat
PF00625Guanylate kinase (Guanylate_kin)Guanylate kinaseDomain
PF12052Voltage gated calcium channel subunit beta domain 4Aa N terminal (VGCC_beta4Aa_N)Voltage gated calcium channel subunit beta domain 4Aa N terminalThe beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal do ...The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal domain. It is made up of an alpha helix and a beta strand. It is thought to regulate the channel properties through protein-protein interactions with non Ca channel proteins. [1]
Domain
PF07774ER membrane protein complex subunit 1, C-terminal (EMC1_C)ER membrane protein complex subunit 1, C-terminalThis is the C-terminal domain of ER membrane protein complex subunit 1. ER membrane protein complex subunit 1 is a component of the ER membrane protein complex (EMC, composed of EMC1, EMC2, EMC3, EMC4, EMC5 and EMC6). In Saccharomyces cerevisiae, the ...This is the C-terminal domain of ER membrane protein complex subunit 1. ER membrane protein complex subunit 1 is a component of the ER membrane protein complex (EMC, composed of EMC1, EMC2, EMC3, EMC4, EMC5 and EMC6). In Saccharomyces cerevisiae, the EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER) [1].
Domain
PF13360Outer membrane protein assembly factor BamB (PQQ_2)Outer membrane protein assembly factor BamB- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth K]Voltage-dependent L-type calcium channel subunit alpha-1C
H [auth I]ER membrane protein complex subunit 10-
G [auth H]ER membrane protein complex subunit 8-
F [auth G]ER membrane protein complex subunit 7
E [auth F]ER membrane protein complex subunit 6-
D [auth E]ER membrane protein complex subunit 5
ER membrane protein complex subunit 3-
ER membrane protein complex subunit 2-
K [auth D]ER membrane protein complex subunit 4-
Voltage-dependent L-type calcium channel subunit beta-3
ER membrane protein complex subunit 1-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth K]IPR014873Voltage-dependent calcium channel, alpha-1 subunit, IQ domainDomain
I [auth K]IPR002077Voltage-dependent calcium channel, alpha-1 subunitFamily
I [auth K]IPR031649Voltage-dependent L-type calcium channel, IQ-associated domainDomain
I [auth K]IPR005451Voltage-dependent calcium channel, L-type, alpha-1C subunitFamily
I [auth K]IPR005821Ion transport domainDomain
I [auth K]IPR005446Voltage-dependent calcium channel, L-type, alpha-1 subunitFamily
I [auth K]IPR050599Voltage-dependent calcium channel alpha-1 subunitFamily
I [auth K]IPR031688Voltage-gated calcium channel subunit alpha, C-terminalDomain
I [auth K]IPR027359Voltage-dependent channel domain superfamilyHomologous Superfamily
G [auth H]IPR037518MPN domainDomain
G [auth H]IPR005366ER membrane protein complex subunit 8/9Family
F [auth G]IPR013784Carbohydrate-binding-like foldHomologous Superfamily
F [auth G]IPR019008ER membrane protein complex subunit 7, beta-sandwich domainDomain
F [auth G]IPR039163ER membrane protein complex subunit 7Family
E [auth F]IPR008504ER membrane protein complex subunit 6Family
E [auth F]IPR029008ER membrane protein complex subunit 6-likeFamily
D [auth E]IPR018937Membrane magnesium transporterFamily
IPR008568ER membrane protein complex subunit 3Family
IPR002809Integral membrane protein EMC3/TMCO1-likeFamily
IPR039856ER membrane protein complex subunit 2-likeFamily
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR055217EMC2, TPR-like domainDomain
IPR019734Tetratricopeptide repeatRepeat
K [auth D]IPR009445ER membrane protein complex subunit 4Family
IPR008145Guanylate kinase/L-type calcium channel beta subunitDomain
IPR001452SH3 domainDomain
IPR036028SH3-like domain superfamilyHomologous Superfamily
IPR035760Voltage-dependent L-type calcium channel subunit beta-3, SH3 domainDomain
IPR046937Voltage-dependent L-type calcium channel subunit beta-1-4, N-terminal A domainDomain
IPR008079Voltage-dependent calcium channel, L-type, beta-3 subunitFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000584Voltage-dependent calcium channel, L-type, beta subunitFamily
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
IPR011678ER membrane protein complex subunit 1, C-terminalDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR026895ER membrane protein complex subunit 1Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth K]PharosQ13936
H [auth I]PharosQ5UCC4
G [auth H]PharosO43402
F [auth G]PharosQ9NPA0
E [auth F]PharosQ9BV81
D [auth E]PharosQ8N4V1
PharosQ9P0I2
PharosQ15006
K [auth D]PharosQ5J8M3
PharosQ8N766