8DFK | pdb_00008dfk

X-ray crystal structure of Bacillus subtilis ComEA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	SLBB	e8dfkG1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)
F	SLBB	e8dfkF1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)
E	SLBB	e8dfkE1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)
D	SLBB	e8dfkD1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)
C	SLBB	e8dfkC1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)
B	SLBB	e8dfkB1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)
A	SLBB	e8dfkA1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: SLBB	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.560.10	Alpha Beta	Roll	Outer membrane lipoprotein wza fold like	Outer membrane lipoprotein wza domain like	CATH (utative)
E	3.10.560.10	Alpha Beta	Roll	Outer membrane lipoprotein wza fold like	Outer membrane lipoprotein wza domain like	CATH (utative)
C	3.10.560.10	Alpha Beta	Roll	Outer membrane lipoprotein wza fold like	Outer membrane lipoprotein wza domain like	CATH (utative)
B	3.10.560.10	Alpha Beta	Roll	Outer membrane lipoprotein wza fold like	Outer membrane lipoprotein wza domain like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF10531	SLBB domain (SLBB)	SLBB domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	ComE operon protein 1	DNA binding binding nucleic acid binding	protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process macromolecule metabolic process DNA repair	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex type II protein secretion system complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR004509	Competence protein ComEA, helix-hairpin-helix domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR051675	Endonuclease/exonuclease/phosphatase family domain-containing protein 1	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR010994	RuvA domain 2-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR019554	Soluble ligand binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR004787	Competence protein ComEA	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.