8BB7
Crystal structure of Mouse Plexin-B1 (20-535) in complex with VHH15
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF01403 | e8bb7B2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF01403 | ECOD (1.6) |
A [auth B] | PF01437 | e8bb7B1 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PF01437 | ECOD (1.6) |
C [auth A] | PF01403 | e8bb7A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF01403 | ECOD (1.6) |
C [auth A] | PF01437 | e8bb7A1 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PF01437 | ECOD (1.6) |
B [auth D] | PF07686 | e8bb7D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth C] | PF07686 | e8bb7C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth D], D [auth C] | Heavy Chain | IGHV1 | - | plexin-b1 | SAbDab (2024-05-03) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth A] | PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family |
A [auth B], C [auth A] | PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], C [auth A] | IPR002909 | IPT domain | Domain |
A [auth B], C [auth A] | IPR041362 | Plexin, TIG domain 2 | Domain |
A [auth B], C [auth A] | IPR016201 | PSI domain | Domain |
A [auth B], C [auth A] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
A [auth B], C [auth A] | IPR008936 | Rho GTPase activation protein | Homologous Superfamily |
A [auth B], C [auth A] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
A [auth B], C [auth A] | IPR002165 | Plexin repeat | Repeat |
A [auth B], C [auth A] | IPR041019 | Plexin, TIG domain 1 | Domain |
A [auth B], C [auth A] | IPR031148 | Plexin family | Family |
A [auth B], C [auth A] | IPR046800 | Plexin, cytoplasmic RhoGTPase-binding domain | Domain |
A [auth B], C [auth A] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth B], C [auth A] | IPR013548 | Plexin, cytoplasmic RasGAP domain | Domain |
A [auth B], C [auth A] | IPR036352 | Sema domain superfamily | Homologous Superfamily |
A [auth B], C [auth A] | IPR001627 | Sema domain | Domain |