8AIL | pdb_00008ail

Bacillus phage VMY22 p56 in complex with Bacillus weidmannii Ung

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth D]	Peptidase_C30	e8ailD1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
K	Peptidase_C30	e8ailK1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
J [auth C]	Peptidase_C30	e8ailC1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
I [auth N]	Peptidase_C30	e8ailN1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
H [auth J]	Peptidase_C30	e8ailJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
G [auth F]	Peptidase_C30	e8ailF1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
F [auth E]	Peptidase_C30	e8ailE1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
E [auth O]	RNA_pol_Rpb6	e8ailO1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.1)
D [auth B]	Peptidase_C30	e8ailB1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
C [auth A]	Peptidase_C30	e8ailA1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
B [auth M]	Peptidase_C30	e8ailM1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_C30	ECOD (v294.1)
A [auth I]	RNA_pol_Rpb6	e8ailI1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth O], F [auth E], G [auth F], H [auth J], I [auth N], E [auth O], F [auth E], G [auth F], H [auth J], I [auth N], J [auth C], K, L [auth D]	PF20763	Phage phi29, UDG inhibitor P56 (UDG-inhib_P56)	Phage phi29, UDG inhibitor P56	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth O], F [auth E], G [auth F], H [auth J], I [auth N], E [auth O], F [auth E], G [auth F], H [auth J], I [auth N], J [auth C], K, L [auth D]	Bacillus phage VMY22 p56	-	-	-
A [auth I], B [auth M], C [auth A], D [auth B]	Uracil-DNA glycosylase	uracil DNA N-glycosylase activity hydrolase activity, acting on glycosyl bonds deaminated base DNA N-glycosylase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid hydrolase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity	cellular response to stimulus response to stimulus base-excision repair, AP site formation via deaminated base removal primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus base-excision repair, AP site formation via deaminated base removal primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process base-excision repair, AP site formation DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth O], F [auth E], G [auth F], H [auth J], I [auth N], E [auth O], F [auth E], G [auth F], H [auth J], I [auth N], J [auth C], K, L [auth D]	IPR049384	P56	Family
A [auth I], B [auth M], C [auth A], D [auth B]	IPR002043	Uracil-DNA glycosylase family 1	Family
A [auth I], B [auth M], C [auth A], D [auth B]	IPR018085	Uracil-DNA glycosylase, active site	Active Site
A [auth I], B [auth M], C [auth A], D [auth B]	IPR036895	Uracil-DNA glycosylase-like domain superfamily	Homologous Superfamily
A [auth I], B [auth M], C [auth A], D [auth B]	IPR005122	Uracil-DNA glycosylase-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.