8A9K

Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 with ML323 (consensus reconstruction)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyUbiquitin-like8043829 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF14631e8a9kB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF14631ECOD (1.6)
CPF00240e8a9kC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
DPF00443e8a9kD1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: PF00443ECOD (1.6)
EPF00400e8a9kE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
EF_UNCLASSIFIEDe8a9kE2 A: beta duplicates or obligate multimersX: WD repeat-containing protein 48 ancillary domain (From Topology)H: WD repeat-containing protein 48 ancillary domain (From Topology)T: WD repeat-containing protein 48 ancillary domainF: F_UNCLASSIFIEDECOD (1.6)
EPF11816e8a9kE3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF11816ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF14675FANCI solenoid 1 (FANCI_S1)FANCI solenoid 1- Repeat
PF14676FANCI solenoid 2 (FANCI_S2)FANCI solenoid 2- Repeat
PF14677FANCI solenoid 3 (FANCI_S3)FANCI solenoid 3- Repeat
PF14678FANCI solenoid 4 (FANCI_S4)FANCI solenoid 4- Repeat
PF14679FANCI helical domain 1 (FANCI_HD1)FANCI helical domain 1- Repeat
PF14631Fanconi anaemia protein FancD2 nuclease (FancD2)Fanconi anaemia protein FancD2 nuclease- Family
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
PF11816Domain of unknown function (DUF3337) (DUF3337)Domain of unknown function (DUF3337)- Family
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Fanconi anemia group I protein
Fanconi anemia group D2 protein
Polyubiquitin-C
Ubiquitin carboxyl-terminal hydrolase 1
WD repeat-containing protein 48
F [auth S],
G [auth T]
DNA (61-MER)---

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9NVI1
PharosQ9BXW9
PharosP0CG48
PharosO94782
PharosQ8TAF3