7SEK

Solution structure of the zinc finger domain of murine MetAP1, complexed with ZNG N-terminal peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF15801	e7sekA1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: HIT/MYND zinc finger-like (From Topology)	T: HIT/MYND zinc finger-like	F: PF15801	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF15801	zf-MYND-like zinc finger, mRNA-binding (zf-C6H2)	zf-MYND-like zinc finger, mRNA-binding	zf-C6H2 is an unusual zinc-finger similar to zf-MYND, Pfam:PF01753.This zinc-finger is found at the N-terminus of Pfam families Exo_endo_phos Pfam:PF03372 and Peptidase_M24 Pfam:PF00557. The domain is missing in prokaryotic methionine aminopeptidases ...	zf-C6H2 is an unusual zinc-finger similar to zf-MYND, Pfam:PF01753.This zinc-finger is found at the N-terminus of Pfam families Exo_endo_phos Pfam:PF03372 and Peptidase_M24 Pfam:PF00557. The domain is missing in prokaryotic methionine aminopeptidases, and is a unique type of zinc-finger domain. It consists of a C2-C2 zinc-finger motif similar to the RING finger family followed by a C2H2 motif similar to zinc-fingers involved in RNA-binding. In yeast the domain chelates zinc in a 2:1 ratio. The domain is found in yeast, plants and mammals. The domain is necessary for the association of the methionine aminopeptidase with the ribosome and the normal processing of the peptidase [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	COBW domain-containing protein 1,Methionine aminopeptidase 1 fusion	zinc chaperone activity metallochaperone activity molecular carrier activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding zinc chaperone activity metallochaperone activity molecular carrier activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity peptidase activity catalytic activity, acting on a protein initiator methionyl aminopeptidase activity aminopeptidase activity exopeptidase activity metallopeptidase activity metalloaminopeptidase activity metalloexopeptidase activity cation binding metal ion binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organism development organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development kidney development renal system development system development inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis intracellular zinc ion homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis proteolysis	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036627	CobW-like, C-terminal domain superfamily	Homologous Superfamily
A	IPR003495	CobW/HypB/UreG, nucleotide-binding domain	Domain
A	IPR011629	Zinc chaperone CobW-like, C-terminal	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR031615	MYND-like zinc finger	Domain
A	IPR001714	Peptidase M24, methionine aminopeptidase	Family
A	IPR002467	Peptidase M24A, methionine aminopeptidase, subfamily 1	Family
A	IPR036005	Creatinase/aminopeptidase-like	Homologous Superfamily
A	IPR000994	Peptidase M24	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.