Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth T] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| H [auth S] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| G [auth R] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| F [auth O] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| F [auth O] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| E [auth M] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| D [auth L] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| C [auth K] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| C [auth K] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| BA [auth m] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| AA [auth l] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| Y [auth j] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| X [auth i] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| W [auth h] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| V [auth g] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| U [auth f] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| T [auth e] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| S [auth d] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| R [auth c] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| Q [auth b] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| P [auth a] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| O [auth Z] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| N [auth Y] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| M [auth X] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| L [auth W] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| K [auth V] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| J [auth U] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth T] | Pkinase, Pkinase_fungal | e7qq3T1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| H [auth S] | Pkinase, Pkinase_fungal | e7qq3S1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| G [auth R] | Pkinase, Pkinase_fungal | e7qq3R1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| F [auth O] | Pkinase, Pkinase_fungal | e7qq3O1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| E [auth M] | Pkinase, Pkinase_fungal | e7qq3M1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| D [auth L] | Pkinase, Pkinase_fungal | e7qq3L1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| C [auth K] | Pkinase, Pkinase_fungal | e7qq3K1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| BA [auth m] | Pkinase, Pkinase_fungal | e7qq3m1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| AA [auth l] | Pkinase, Pkinase_fungal | e7qq3l1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| Z [auth k] | Pkinase, Pkinase_fungal | e7qq3k1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| Y [auth j] | Pkinase, Pkinase_fungal | e7qq3j1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| X [auth i] | Pkinase, Pkinase_fungal | e7qq3i1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| W [auth h] | Pkinase, Pkinase_fungal | e7qq3h1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| V [auth g] | Pkinase, Pkinase_fungal | e7qq3g1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| U [auth f] | Pkinase, Pkinase_fungal | e7qq3f1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| T [auth e] | Pkinase, Pkinase_fungal | e7qq3e1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| S [auth d] | Pkinase, Pkinase_fungal | e7qq3d1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| R [auth c] | Pkinase, Pkinase_fungal | e7qq3c1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| Q [auth b] | Pkinase, Pkinase_fungal | e7qq3b1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| P [auth a] | Pkinase, Pkinase_fungal | e7qq3a1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| O [auth Z] | Pkinase, Pkinase_fungal | e7qq3Z1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| N [auth Y] | Pkinase, Pkinase_fungal | e7qq3Y1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| M [auth X] | Pkinase, Pkinase_fungal | e7qq3X1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| L [auth W] | Pkinase, Pkinase_fungal | e7qq3W1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| K [auth V] | Pkinase, Pkinase_fungal | e7qq3V1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
| J [auth U] | Pkinase, Pkinase_fungal | e7qq3U1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Pkinase, Pkinase_fungal | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| I [auth T] | 3.100.10.10 | Alpha Beta | Ribosomal Protein L15 | Chain: K | domain 2 | CATH (utative) |
| F [auth O] | 3.90.930.12 | Alpha Beta | Alpha-Beta Complex | Outer Surface Protein A | domain 3 | CATH (utative) |
| P [auth a] | 3.90.470.10 | Alpha Beta | Alpha-Beta Complex | Ribosomal Protein L22 | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| CA [auth B] | AG2 | |
| CA [auth B] | DAL | :  AA0111 , AA0191 :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 |
| CA [auth B] | DAR | :  AA0111 , AA0191 |
| CA [auth B] | DHV | :  AA0111 , AA0191 |
| CA [auth B] | DVA | :  AA0111 , AA0191 , AA0200 :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-valine MOD:00705 |
| CA [auth B] | IB9 | Parent Component: TYR :  AA0111 , AA0191 , AA0200 |
| CA [auth B] | IVA | :  AA0111 , AA0191 , AA0200 |
| CA [auth B] | MAA | Parent Component: ALA :  AA0111 , AA0191 , AA0200 , AA0061 :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-valine MOD:00705 , N-methyl-L-alanine MOD:00070 |
| CA [auth B] | RX9 | Parent Component: ILE :  AA0111 , AA0191 , AA0200 , AA0061 |
| CA [auth B] | RXL | Parent Component: VAL :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | 1MG | Parent Component: G :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | 2MA | Parent Component: A :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | 2MG | Parent Component: G :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | 5MC | Parent Component: C :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | 5MU | Parent Component: U :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | OMC | Parent Component: C :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | OMG | Parent Component: G :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | OMU | Parent Component: U :  AA0111 , AA0191 , AA0200 , AA0061 |
| A [auth I] | PSU | Parent Component: U :  AA0111 , AA0191 , AA0200 , AA0061 |














