Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth S091] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| H [auth S081] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| G [auth S071] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| F [auth S061] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| ZA [auth L361] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| YA [auth L351] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| WA [auth L331] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| VA [auth L321] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| UA [auth L311] | SCOP2B Superfamily | L28p-like | 8032740 | 3001966 | SCOP2B (2022-06-29) |
| TA [auth L301] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| SA [auth L291] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| RA [auth L281] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| QA [auth L271] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| PA [auth L251] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| OA [auth L241] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| NA [auth L231] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| D [auth S041] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| MA [auth L221] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| LA [auth L211] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| KA [auth L201] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| JA [auth L191] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| IA [auth L181] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| HA [auth L171] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| GA [auth L161] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| FA [auth L151] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| EA [auth L141] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| DA [auth L131] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| CA [auth L091] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| CA [auth L091] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| BA [auth L061] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| BA [auth L061] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| AA [auth L051] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| Z [auth L041] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| Y [auth L031] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| X [auth L021] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| X [auth L021] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| U [auth S211] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| B [auth S021] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| S [auth S191] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| Q [auth S171] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| P [auth S161] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| O [auth S151] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| N [auth S141] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| M [auth S131] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| L [auth S121] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| K [auth S111] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| J [auth S101] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth S091] | Iso_dh | e7ztaS0911 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| H [auth S081] | Iso_dh | e7ztaS0811 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| G [auth S071] | Iso_dh | e7ztaS0711 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| F [auth S061] | Iso_dh | e7ztaS0611 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| ZA [auth L361] | Iso_dh | e7ztaL3611 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| YA [auth L351] | Iso_dh | e7ztaL3511 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| XA [auth L341] | Iso_dh | e7ztaL3411 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| E [auth S051] | Iso_dh | e7ztaS0511 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| WA [auth L331] | Iso_dh | e7ztaL3311 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| VA [auth L321] | Iso_dh | e7ztaL3211 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| UA [auth L311] | Iso_dh | e7ztaL3111 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| TA [auth L301] | Iso_dh | e7ztaL3011 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| SA [auth L291] | Iso_dh | e7ztaL2911 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| RA [auth L281] | Iso_dh | e7ztaL2811 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| QA [auth L271] | Iso_dh | e7ztaL2711 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| PA [auth L251] | Iso_dh | e7ztaL2511 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| OA [auth L241] | Iso_dh | e7ztaL2411 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| NA [auth L231] | Iso_dh | e7ztaL2311 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| D [auth S041] | Iso_dh | e7ztaS0411 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| MA [auth L221] | Iso_dh | e7ztaL2211 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| LA [auth L211] | Iso_dh | e7ztaL2111 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| KA [auth L201] | Iso_dh | e7ztaL2011 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| JA [auth L191] | Iso_dh | e7ztaL1911 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| IA [auth L181] | Iso_dh | e7ztaL1811 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| HA [auth L171] | Iso_dh | e7ztaL1711 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| GA [auth L161] | Iso_dh | e7ztaL1611 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| FA [auth L151] | Iso_dh | e7ztaL1511 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| EA [auth L141] | Iso_dh | e7ztaL1411 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| DA [auth L131] | Iso_dh | e7ztaL1311 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| C [auth S031] | Iso_dh | e7ztaS0311 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| CA [auth L091] | Iso_dh | e7ztaL0911 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| BA [auth L061] | Iso_dh | e7ztaL0611 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| AA [auth L051] | Iso_dh | e7ztaL0511 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| Z [auth L041] | Iso_dh | e7ztaL0411 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| Y [auth L031] | Iso_dh | e7ztaL0311 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| X [auth L021] | Iso_dh | e7ztaL0211 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| U [auth S211] | Iso_dh | e7ztaS2111 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| T [auth S201] | Iso_dh | e7ztaS2011 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| B [auth S021] | Iso_dh | e7ztaS0211 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| S [auth S191] | Iso_dh | e7ztaS1911 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| R [auth S181] | Iso_dh | e7ztaS1811 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| Q [auth S171] | Iso_dh | e7ztaS1711 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| P [auth S161] | Iso_dh | e7ztaS1611 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| O [auth S151] | Iso_dh | e7ztaS1511 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| N [auth S141] | Iso_dh | e7ztaS1411 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| M [auth S131] | Iso_dh | e7ztaS1311 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| L [auth S121] | Iso_dh | e7ztaS1211 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| K [auth S111] | Iso_dh | e7ztaS1111 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
| J [auth S101] | Iso_dh | e7ztaS1011 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Iso_dh | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| DB [auth ETR1] | 2MA | Parent Component: A |
| DB [auth ETR1] | 4SU | Parent Component: U |
| DB [auth ETR1] | 5MU | Parent Component: U |
| DB [auth ETR1] | H2U | Parent Component: U |
| DB [auth ETR1] | OMG | Parent Component: G |
| DB [auth ETR1] | OMU | Parent Component: U |
| DB [auth ETR1] | PSU | Parent Component: U |
| BB [auth PTR1] | 5MU | Parent Component: U |
| BB [auth PTR1] | G7M | Parent Component: G |
| BB [auth PTR1] | H2U | Parent Component: U |
| BB [auth PTR1] | PSU | Parent Component: U |
| BB [auth PTR1] | T6A | Parent Component: A |
| BB [auth PTR1] | U8U | Parent Component: U |
| AB [auth ATR1] | 4SU | Parent Component: U |
| AB [auth ATR1] | 5MU | Parent Component: U |
| AB [auth ATR1] | MIA | Parent Component: A |
| AB [auth ATR1] | PSU | Parent Component: U |
| GA [auth L161] | 4D4 | Parent Component: ARG |
| Y [auth L031] | MEQ | Parent Component: GLN :  AA0071 :  N5-methyl-L-glutamine MOD:00080 |
| V [auth 23S1] | 1MG | Parent Component: G :  AA0071 |
| V [auth 23S1] | 2MA | Parent Component: A :  AA0071 |
| V [auth 23S1] | 2MG | Parent Component: G :  AA0071 |
| V [auth 23S1] | 3TD | Parent Component: U :  AA0071 |
| V [auth 23S1] | 5MC | Parent Component: C :  AA0071 |
| V [auth 23S1] | 5MU | Parent Component: U :  AA0071 |
| V [auth 23S1] | 6MZ | Parent Component: A :  AA0071 |
| V [auth 23S1] | G7M | Parent Component: G :  AA0071 |
| V [auth 23S1] | H2U | Parent Component: U :  AA0071 |
| V [auth 23S1] | OMC | Parent Component: C :  AA0071 |
| V [auth 23S1] | OMG | Parent Component: G :  AA0071 |
| V [auth 23S1] | OMU | Parent Component: U :  AA0071 |
| V [auth 23S1] | PSU | Parent Component: U :  AA0071 |
| L [auth S121] | D2T | Parent Component: ASP :  AA0071 |
| A [auth 16S1] | 2MG | Parent Component: G :  AA0071 |
| A [auth 16S1] | 4OC | Parent Component: C :  AA0071 |
| A [auth 16S1] | 5MC | Parent Component: C :  AA0071 |
| A [auth 16S1] | G7M | Parent Component: G :  AA0071 |
| A [auth 16S1] | MA6 | Parent Component: A :  AA0071 |
| A [auth 16S1] | PSU | Parent Component: U :  AA0071 |
| A [auth 16S1] | UR3 | Parent Component: U :  AA0071 |














