7ZPP
Cryo-EM structure of the MVV CSC intasome at 4.5A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IN_DBD_C | e7zppA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
A | Integrase_Zn | e7zppA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
A | rve | e7zppA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
B | IN_DBD_C | e7zppB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
B | Integrase_Zn | e7zppB2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
B | rve | e7zppB3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
C | IN_DBD_C | e7zppC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
C | Integrase_Zn | e7zppC3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
C | rve | e7zppC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
D | IN_DBD_C | e7zppD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
D | rve | e7zppD2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
E | IN_DBD_C | e7zppE2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
E | Integrase_Zn | e7zppE3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
E | rve | e7zppE1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
F | IN_DBD_C | e7zppF3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
F | Integrase_Zn | e7zppF1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
F | rve | e7zppF2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
G | Integrase_Zn | e7zppG2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
G | rve | e7zppG1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
H | IN_DBD_C | e7zppH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
H | rve | e7zppH2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
I | IN_DBD_C | e7zppI3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
I | Integrase_Zn | e7zppI1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
I | rve | e7zppI2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
J | IN_DBD_C | e7zppJ2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
J | Integrase_Zn | e7zppJ1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
J | rve | e7zppJ3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
K | IN_DBD_C | e7zppK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
K | Integrase_Zn | e7zppK2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
K | rve | e7zppK3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
L | IN_DBD_C | e7zppL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
L | rve | e7zppL2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
M | IN_DBD_C | e7zppM2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
M | Integrase_Zn | e7zppM1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
M | rve | e7zppM3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
N | IN_DBD_C | e7zppN2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
N | Integrase_Zn | e7zppN1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
N | rve | e7zppN3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
O | Integrase_Zn | e7zppO2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
O | rve | e7zppO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
P | IN_DBD_C | e7zppP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
P | rve | e7zppP2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02022 | Integrase Zinc binding domain (Integrase_Zn) | Integrase Zinc binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ... | Domain | |
PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain | |