7ZC1 | pdb_00007zc1

Subtomogram averaging of Rubisco from Cyanobium carboxysome

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RuBisCO_large_N	e7zc1A2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
A	RuBisCO_large	e7zc1A1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
C [auth D]	RuBisCO_large_N	e7zc1D1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
C [auth D]	RuBisCO_large	e7zc1D2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
E [auth G]	RuBisCO_large_N	e7zc1G2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
E [auth G]	RuBisCO_large	e7zc1G1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
G [auth J]	RuBisCO_large_N	e7zc1J1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
G [auth J]	RuBisCO_large	e7zc1J2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
I [auth M]	RuBisCO_large_N	e7zc1M1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
I [auth M]	RuBisCO_large	e7zc1M2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
K [auth P]	RuBisCO_large_N	e7zc1P1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
K [auth P]	RuBisCO_large	e7zc1P2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
M [auth S]	RuBisCO_large_N	e7zc1S1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
M [auth S]	RuBisCO_large	e7zc1S2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
O [auth V]	RuBisCO_large_N	e7zc1V2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
O [auth V]	RuBisCO_large	e7zc1V1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
B	RuBisCO_small	e7zc1B1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
D [auth E]	RuBisCO_small	e7zc1E1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
F [auth H]	RuBisCO_small	e7zc1H1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
H [auth K]	RuBisCO_small	e7zc1K1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
J [auth N]	RuBisCO_small	e7zc1N1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
L [auth Q]	RuBisCO_small	e7zc1Q1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
N [auth T]	RuBisCO_small	e7zc1T1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
P [auth W]	RuBisCO_small	e7zc1W1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle
B, D [auth E], F [auth H], H [auth K], J [auth N], B, D [auth E], F [auth H], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth W]	Ribulose bisphosphate carboxylase, small subunit	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR033966	RuBisCO	Family
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily