7ZA1 | pdb_00007za1

GPC3-Unc5D octamer structure and role in cell migration

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth H]I-sete7za1H1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-setECOD (1.6)
D [auth H]I-set_11e7za1H3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-set_11ECOD (1.6)
D [auth H]TSP_1e7za1H2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: TSP_1ECOD (1.6)
C [auth G]I-sete7za1G3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-setECOD (1.6)
C [auth G]I-set_11e7za1G1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-set_11ECOD (1.6)
C [auth G]TSP_1e7za1G2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: TSP_1ECOD (1.6)
B [auth F]I-sete7za1F3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-setECOD (1.6)
B [auth F]I-set_11e7za1F2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-set_11ECOD (1.6)
B [auth F]TSP_1e7za1F1 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: TSP_1ECOD (1.6)
A [auth E]I-sete7za1E2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-setECOD (1.6)
A [auth E]I-set_11e7za1E1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-set_11ECOD (1.6)
A [auth E]TSP_1e7za1E3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: TSP_1ECOD (1.6)
E [auth A]Glypican_1ste7za1A2 A: alpha complex topologyX: Glypican insertion domain (From Topology)H: Glypican insertion domain (From Topology)T: Glypican insertion domainF: Glypican_1stECOD (1.6)
E [auth A]Glypican_2nde7za1A1 A: few secondary structure elementsX: Frizzled cysteine-rich domain-related (From Topology)H: Frizzled cysteine-rich domain-related (From Topology)T: Frizzled cysteine-rich domain-relatedF: Glypican_2ndECOD (1.6)
F [auth C]Glypican_1ste7za1C2 A: alpha complex topologyX: Glypican insertion domain (From Topology)H: Glypican insertion domain (From Topology)T: Glypican insertion domainF: Glypican_1stECOD (1.6)
F [auth C]Glypican_2nde7za1C1 A: few secondary structure elementsX: Frizzled cysteine-rich domain-related (From Topology)H: Frizzled cysteine-rich domain-related (From Topology)T: Frizzled cysteine-rich domain-relatedF: Glypican_2ndECOD (1.6)
H [auth B]Glypican_1ste7za1B2 A: alpha complex topologyX: Glypican insertion domain (From Topology)H: Glypican insertion domain (From Topology)T: Glypican insertion domainF: Glypican_1stECOD (1.6)
H [auth B]Glypican_2nde7za1B1 A: few secondary structure elementsX: Frizzled cysteine-rich domain-related (From Topology)H: Frizzled cysteine-rich domain-related (From Topology)T: Frizzled cysteine-rich domain-relatedF: Glypican_2ndECOD (1.6)
G [auth D]Glypican_1ste7za1D1 A: alpha complex topologyX: Glypican insertion domain (From Topology)H: Glypican insertion domain (From Topology)T: Glypican insertion domainF: Glypican_1stECOD (1.6)
G [auth D]Glypican_2nde7za1D2 A: few secondary structure elementsX: Frizzled cysteine-rich domain-related (From Topology)H: Frizzled cysteine-rich domain-related (From Topology)T: Frizzled cysteine-rich domain-relatedF: Glypican_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth E],
B [auth F],
C [auth G],
D [auth H]		PF00090Thrombospondin type 1 domain (TSP_1)Thrombospondin type 1 domainDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		PF07679Immunoglobulin I-set domain (I-set)Immunoglobulin I-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth E],
B [auth F],
C [auth G],
D [auth H]		Netrin receptor UNC5D
E [auth A],
F [auth C],
G [auth D],
H [auth B]		Glypican-3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR000884Thrombospondin type-1 (TSP1) repeatRepeat
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR057755Netrin receptor UNC5A-D-like, N-terminal domainDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR042058UNC5D, Death domainDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR011029Death-like domain superfamilyHomologous Superfamily
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR003598Immunoglobulin subtype 2Domain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR036383Thrombospondin type-1 repeat superfamilyHomologous Superfamily
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR033772UPA domainDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR037936Netrin receptor UNC5A-DFamily
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR000488Death domainDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR003599Immunoglobulin domain subtypeDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR007110Immunoglobulin-like domainDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR013098Immunoglobulin I-setDomain
A [auth E],
B [auth F],
C [auth G],
D [auth H]		IPR000906ZU5 domainDomain
E [auth A],
F [auth C],
G [auth D],
H [auth B]		IPR001863GlypicanFamily
E [auth A],
F [auth C],
G [auth D],
H [auth B]		IPR019803Glypican, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth A],
F [auth C],
G [auth D],
H [auth B]		Pharos:  P51654