7Z3J | pdb_00007z3j

Structure of crystallisable rat Phospholipase C gamma 1 in complex with inositol 1,4,5-trisphosphate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SH3-domain	8062097	3000153	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PH domain-like	8041033	3000134	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH2 domain	8066291	3000197	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PH domain-like	8041033	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PH	e7z3jA7	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
A	PH_12	e7z3jA2	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH_12	ECOD (1.6)
A	SH3_1	e7z3jA9	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
A	C2	e7z3jA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: C2 domain (From Topology)	T: C2 domain	F: C2	ECOD (1.6)
A	F_UNCLASSIFIED	e7z3jA5	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: F_UNCLASSIFIED	ECOD (1.6)
A	EF-hand_7_7	e7z3jA8	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_7	ECOD (1.6)
A	SH2	e7z3jA3	A: a+b two layers	X: SH2 (From Topology)	H: SH2 (From Topology)	T: SH2	F: SH2	ECOD (1.6)
A	PI-PLC-X	e7z3jA6	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PI-PLC-X	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00017	SH2 domain (SH2)	SH2 domain		Domain
A	PF00018	SH3 domain (SH3_1)	SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain
A	PF00387	Phosphatidylinositol-specific phospholipase C, Y domain (PI-PLC-Y)	Phosphatidylinositol-specific phospholipase C, Y domain	-	Family
A	PF00168	C2 domain (C2)	C2 domain		Domain
A	PF00388	Phosphatidylinositol-specific phospholipase C, X domain (PI-PLC-X)	Phosphatidylinositol-specific phospholipase C, X domain	-	Family
A	PF00169	PH domain (PH)	PH domain	PH stands for pleckstrin homology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	phosphoprotein binding protein binding binding signaling receptor binding insulin receptor binding neurotrophin TRK receptor binding neurotrophin TRKA receptor binding cytokine receptor binding neurotrophin receptor binding protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding phosphoprotein binding protein binding binding signaling receptor binding insulin receptor binding neurotrophin TRK receptor binding neurotrophin TRKA receptor binding cytokine receptor binding neurotrophin receptor binding protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity phospholipase C activity hydrolase activity catalytic activity phospholipase activity lipase activity cation binding ion binding calcium ion binding metal ion binding small molecule binding phosphatidylinositol-4,5-bisphosphate phospholipase C activity glutamate receptor binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity calcium-dependent phospholipase C activity	response to ketone response to curcumin response to ether response to stimulus response to chemical response to oxygen-containing compound cell migration cellular process cell motility developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development response to ketone response to curcumin response to ether response to stimulus response to chemical response to oxygen-containing compound cell migration cellular process cell motility developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development in utero embryonic development cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation intracellular signal transduction cell communication phosphatidylinositol-mediated signaling signal transduction trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway ERBB signaling pathway epidermal growth factor receptor signaling pathway enzyme-linked receptor protein signaling pathway cell population proliferation positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation positive regulation of biological process regulation of vascular endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation vascular endothelial cell proliferation epithelial cell proliferation positive regulation of vascular endothelial cell proliferation positive regulation of cellular process polyol metabolic process small molecule biosynthetic process inositol trisphosphate biosynthetic process alcohol metabolic process inositol phosphate metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process inositol phosphate biosynthetic process phosphate-containing compound metabolic process polyol biosynthetic process alcohol biosynthetic process inositol trisphosphate metabolic process metabolic process small molecule metabolic process phosphorus metabolic process response to hydrogen peroxide response to oxidative stress response to stress response to reactive oxygen species response to abiotic stimulus response to gravity immune response-regulating cell surface receptor signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response calcium-mediated signaling intracellular signaling cassette positive regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration positive regulation of cell migration positive regulation of blood vessel endothelial cell migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration blood vessel endothelial cell migration regulation of endothelial cell migration locomotion regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process tube morphogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process phosphatidylinositol metabolic process lipid catabolic process catabolic process phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process phosphatidylinositol catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process glycerophospholipid catabolic process glycerolipid metabolic process lipid metabolic process regulation of localization cellular localization inorganic ion homeostasis intracellular calcium ion homeostasis transport homeostatic process monoatomic ion transmembrane transport negative regulation of biological process calcium ion homeostasis negative regulation of sequestering of calcium ion calcium ion transport metal ion transport maintenance of location in cell monoatomic cation transmembrane transport localization intracellular monoatomic cation homeostasis monoatomic ion homeostasis negative regulation of cellular process monoatomic ion transport intracellular chemical homeostasis monoatomic cation homeostasis monoatomic cation transport regulation of sequestering of calcium ion intracellular monoatomic ion homeostasis calcium ion transmembrane import into cytosol sequestering of calcium ion establishment of localization maintenance of location transmembrane transport release of sequestered calcium ion into cytosol cellular homeostasis chemical homeostasis calcium ion transmembrane transport positive regulation of endothelial cell apoptotic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process endothelial cell apoptotic process apoptotic process programmed cell death regulation of endothelial cell apoptotic process regulation of calcium ion transport positive regulation of cation transmembrane transport positive regulation of calcium ion transport positive regulation of monoatomic ion transport positive regulation of monoatomic ion transmembrane transport regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport regulation of transmembrane transport regulation of monoatomic ion transmembrane transport regulation of calcium ion transmembrane transport positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport positive regulation of release of sequestered calcium ion into cytosol regulation of metal ion transport regulation of transport positive regulation of transport regulation of monoatomic cation transmembrane transport cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to epidermal growth factor stimulus response to epidermal growth factor response to growth factor positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration epithelial cell migration regulation of epithelial cell migration epithelium migration	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction cell junction intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction cell junction intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle synapse glutamatergic synapse ruffle plasma membrane membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane intracellular vesicle cytoplasmic vesicle clathrin-coated vesicle coated vesicle vesicle Schaffer collateral - CA1 synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR035724	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1, SH3 domain	Domain
A	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A	IPR002048	EF-hand domain	Domain
A	IPR057061	PLCG, EF-hand domain 2	Domain
A	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A	IPR001192	Phosphoinositide phospholipase C family	Family
A	IPR001452	SH3 domain	Domain
A	IPR001849	Pleckstrin homology domain	Domain
A	IPR036860	SH2 domain superfamily	Homologous Superfamily
A	IPR035023	PLC-gamma, C-terminal SH2 domain	Domain
A	IPR001711	Phospholipase C, phosphatidylinositol-specific, Y domain	Domain
A	IPR000980	SH2 domain	Domain
A	IPR016279	Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma	Family
A	IPR000008	C2 domain	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR000909	Phosphatidylinositol-specific phospholipase C, X domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily
A	IPR035024	PLC-gamma, N-terminal SH2 domain	Domain
A	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Homologous Superfamily
A	IPR035892	C2 domain superfamily	Homologous Superfamily