7USL

Integrin alphaM/beta2 ectodomain in complex with adenylate cyclase toxin RTX751 and M1F5 Fab


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF08441e7uslA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08441ECOD (1.6)
APF20805e7uslA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF20805ECOD (1.6)
APF21520e7uslA3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF21520ECOD (1.6)
APF01839e7uslA4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF01839ECOD (1.6)
BF_UNCLASSIFIEDe7uslB4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
BPF07965e7uslB8 A: a+b two layersX: Integrin beta tail domain (From Topology)H: Integrin beta tail domain (From Topology)T: Integrin beta tail domainF: PF07965ECOD (1.6)
BPF00362e7uslB5 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: PF00362ECOD (1.6)
BPF17205e7uslB1 A: few secondary structure elementsX: Trefoil/Plexin domain-like (From Topology)H: Trefoil/Plexin domain-like (From Topology)T: Trefoil/Plexin domain-likeF: PF17205ECOD (1.6)
BF_UNCLASSIFIEDe7uslB3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
BPF07974e7uslB2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: PF07974ECOD (1.6)
BPF18372e7uslB7 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: PF18372ECOD (1.6)
D [auth H]PF07686e7uslH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
E [auth L]PF07686e7uslL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth H]Heavy ChainIGHV1 -bifunctional hemolysin-adenylate cyclaseSAbDab (2024-05-03)
E [auth L]Light ChainIGKV10 Kappabifunctional hemolysin-adenylate cyclaseSAbDab (2024-05-03)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21520Integrin alpha-X-like, Ig-like domain 3 (ITGAX-like_Ig_3)Integrin alpha-X-like, Ig-like domain 3This domain is found in Integrin alpha-X from humans (ITGAX) and similar proteins predominantly found in vertebrates. ITGAX is a receptor for fibrinogen. This region composed of an immunoglobulin-like domain [1,3].Domain
PF20805Integrin alpha Ig-like domain 2 (Integrin_A_Ig_2)Integrin alpha Ig-like domain 2This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.Domain
PF01839FG-GAP repeat (FG-GAP)FG-GAP repeat- Repeat
PF08441Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1)Integrin alpha Ig-like domain 1This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.Domain
PF17205Integrin plexin domain (PSI_integrin)Integrin plexin domainThis short disulphide rich domain is found at the N-terminus of integrin beta chains.Domain
PF00362Integrin beta chain VWA domain (Integrin_beta)Integrin beta chain VWA domainIntegrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain.Domain
PF07965Integrin beta tail domain (Integrin_B_tail)Integrin beta tail domainThis is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.Domain
PF02382N-terminal domain in RTX protein (RTX)N-terminal domain in RTX proteinThe RTX family of bacterial toxins are a group of cytolysins and cytotoxins that have RTX (Repeat in ToXin repeats) Pfam:PF00353. This is a hydrophobic pore-forming domain found at the N-terminal of these proteins [2].Domain
PF00353RTX calcium-binding nonapeptide repeat (4 copies) (HemolysinCabind)RTX calcium-binding nonapeptide repeat (4 copies)- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Integrin alpha-M
Integrin beta
Bifunctional hemolysin-adenylate cyclase
D [auth H]M1F5 fab heavy chain---
E [auth L]M1F5 fab light chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013517FG-GAP repeatRepeat
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR013649Integrin alpha, first immunoglubulin-like domainDomain
IPR002035von Willebrand factor, type ADomain
IPR048285Integrin alpha, second immunoglobulin-like domainDomain
IPR032695Integrin domain superfamilyHomologous Superfamily
IPR013519Integrin alpha beta-propellorRepeat
IPR000413Integrin alpha chainFamily
IPR048633Integrin alpha-X-like, third Ig-like domainDomain
IPR028994Integrin alpha, N-terminalHomologous Superfamily
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved siteConserved Site
IPR033760Integrin beta N-terminalDomain
IPR036349Integrin beta tail domain superfamilyHomologous Superfamily
IPR014836Integrin beta subunit, cytoplasmic domainDomain
IPR012896Integrin beta subunit, tailDomain
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR032695Integrin domain superfamilyHomologous Superfamily
IPR015812Integrin beta subunitFamily
IPR002369Integrin beta subunit, VWA domainDomain
IPR016201PSI domainDomain
IPR015439Integrin beta-2 superfamilyHomologous Superfamily
IPR018504RTX, pore-forming domainDomain
IPR005165Anthrax toxin, edema factor, centralDomain
IPR010566Haemolysin-type calcium binding-relatedDomain
IPR001343RTX calcium-binding nonapeptide repeatRepeat
IPR035099Anthrax toxin, edema factor, C-terminalHomologous Superfamily
IPR003995RTX toxin determinant AFamily
IPR037017Anthrax toxin, edema factor, central domain superfamilyHomologous Superfamily
IPR018511Hemolysin-type calcium-binding conserved siteConserved Site
IPR011049Serralysin-like metalloprotease, C-terminalHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP11215
PharosP05107