Annotations: 7U32

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
R [auth P]	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
P [auth N]	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
O [auth M]	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
N [auth L]	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
M [auth K]	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
K [auth I]	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DNA-binding domain of retroviral integrase	8072259	3000355	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	IN_DBD_C	e7u32H1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
H	rve	e7u32H2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
R [auth P]	IN_DBD_C	e7u32P1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
R [auth P]	rve	e7u32P2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
Q [auth O]	Integrase_Zn	e7u32O1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
Q [auth O]	rve	e7u32O2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
P [auth N]	IN_DBD_C	e7u32N3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
P [auth N]	Integrase_Zn	e7u32N1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
P [auth N]	rve	e7u32N2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
O [auth M]	IN_DBD_C	e7u32M1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
O [auth M]	Integrase_Zn	e7u32M3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
O [auth M]	rve	e7u32M2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
N [auth L]	IN_DBD_C	e7u32L2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
N [auth L]	rve	e7u32L1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
M [auth K]	IN_DBD_C	e7u32K1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
M [auth K]	Integrase_Zn	e7u32K2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
M [auth K]	rve	e7u32K3	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
L [auth J]	Integrase_Zn	e7u32J1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
L [auth J]	rve	e7u32J2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
K [auth I]	IN_DBD_C	e7u32I2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
K [auth I]	Integrase_Zn	e7u32I3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
K [auth I]	rve	e7u32I1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
G	Integrase_Zn	e7u32G1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
G	rve	e7u32G2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
F	IN_DBD_C	e7u32F3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
F	Integrase_Zn	e7u32F1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
F	rve	e7u32F2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
E	IN_DBD_C	e7u32E2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
E	Integrase_Zn	e7u32E3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
E	rve	e7u32E1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
D	IN_DBD_C	e7u32D2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
D	rve	e7u32D1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
C	IN_DBD_C	e7u32C3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
C	Integrase_Zn	e7u32C2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
C	rve	e7u32C1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
B	Integrase_Zn	e7u32B1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
B	rve	e7u32B2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
A	IN_DBD_C	e7u32A1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
A	Integrase_Zn	e7u32A3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
A	rve	e7u32A2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Q [auth O]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (utative)
Q [auth O]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
P [auth N]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
P [auth N]	2.30.30.10	Mainly Beta	Roll	SH3 type barrels.	Integrase, C-terminal domain superfamily, retroviral	CATH (utative)
O [auth M]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
M [auth K]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
L [auth J]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
K [auth I]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
G	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (utative)
G	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
F	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
F	2.30.30.10	Mainly Beta	Roll	SH3 type barrels.	Integrase, C-terminal domain superfamily, retroviral	CATH (utative)
E	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
C	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
B	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)
A	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth W], T [auth Z]	DNA EV272	-	-	-
I [auth X], S [auth Y]	DNA EV273	-	-	-
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	Integrase	catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exoribonuclease H activity exonuclease activity catalytic activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exoribonuclease H activity exonuclease activity catalytic activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein aspartic-type endopeptidase activity endopeptidase activity endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism RNA-DNA hybrid ribonuclease activity RNA endonuclease activity RNA-directed DNA polymerase activity RNA binding RNA stem-loop binding pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides dUTP diphosphatase activity hydrolase activity, acting on acid anhydrides cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral gene expression viral translational frameshifting viral translation viral genome integration into host DNA biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral gene expression viral translational frameshifting viral translation viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process nucleoside phosphate metabolic process nucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process DNA integration proteolysis protein metabolic process	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR036157	dUTPase-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR001969	Aspartic peptidase, active site	Active Site
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR029054	dUTPase-like	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR018061	Retropepsins	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR002156	Ribonuclease H domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR001584	Integrase, catalytic core	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR033704	dUTPase, trimeric	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR001037	Integrase, C-terminal, retroviral	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR000477	Reverse transcriptase domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth P]	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily