7T5Q | pdb_00007t5q

Cryo-EM Structure of a Transition State of Arp2/3 Complex Activation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyArp2/3 complex subunits 8037903 3000751 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyArp2/3 complex 21 kDa subunit ARPC3 8037901 3001830 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyArp2/3 complex subunits 8037899 3000751 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyArp2/3 complex subunits 8037898 3000751 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyActin-like ATPases 8037893 3000092 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActin-like ATPases 8037891 3000092 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActin-like ATPases 8037889 3000092 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator Chain: A,CATH (utative)
C2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01267F-actin capping protein alpha subunit (F-actin_cap_A)F-actin capping protein alpha subunit- Family
PF04045Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc)Arp2/3 complex, 34 kD subunit p34-Arc- Family
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00022Actin (Actin)Actin- Family
PF02205WH2 motif (WH2)WH2 motif- Motif
PF01115F-actin capping protein, beta subunit (F_actin_cap_B)F-actin capping protein, beta subunit- Family
PF00022Actin (Actin)Actin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F-actin-capping protein subunit alpha-1/Actin nucleation-promoting factor WASL chimera
Actin, alpha skeletal muscle
Actin-related protein 2/3 complex subunit 5
Actin-related protein 2/3 complex subunit 4
Actin-related protein 2/3 complex subunit 3
Actin-related protein 2/3 complex subunit 2
Actin-related protein 2/3 complex subunit 1A
Actin-related protein 2
F-actin-capping protein subunit beta/Actin nucleation-promoting factor WASL chimera
Actin-related protein 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002189F-actin-capping protein subunit alphaFamily
IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
IPR000095CRIB domainDomain
IPR000697WH1/EVH1 domainDomain
IPR036936CRIB domain superfamilyHomologous Superfamily
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR003124WH2 domainDomain
IPR011026Actin nucleation-promoting factor WAS, C-terminalHomologous Superfamily
IPR033927WASP family, EVH1 domainDomain
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004001Actin, conserved siteConserved Site
IPR004000Actin familyFamily
IPR006789Actin-related protein 2/3 complex subunit 5Family
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyHomologous Superfamily
IPR034666Arp2/3 complex subunit 2/4Homologous Superfamily
IPR008384Actin-related protein 2/3 complex subunit 4Family
IPR036753Actin-related protein 2/3 complex subunit 3 superfamilyHomologous Superfamily
IPR007204Actin-related protein 2/3 complex subunit 3Family
IPR034666Arp2/3 complex subunit 2/4Homologous Superfamily
IPR007188Actin-related protein 2/3 complex subunit 2Family
IPR017383Actin-related protein 2/3 complex subunit 1Family
IPR001680WD40 repeatRepeat
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR001698F-actin-capping protein subunit betaFamily
IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
IPR000095CRIB domainDomain
IPR000697WH1/EVH1 domainDomain
IPR036936CRIB domain superfamilyHomologous Superfamily
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR003124WH2 domainDomain
IPR011026Actin nucleation-promoting factor WAS, C-terminalHomologous Superfamily
IPR033927WASP family, EVH1 domainDomain
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322