7T10 | pdb_00007t10

CryoEM structure of somatostatin receptor 2 in complex with somatostatin-14 and Gi3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth R]SCOP2 FamilyClass A (rhodopsin) G protein-coupled receptor-like 8106945 4001858 SCOP2 (2022-06-29)
A [auth R]SCOP2 SuperfamilyG protein-coupled receptor-like 8106946 3000473 SCOP2 (2022-06-29)
B [auth A]SCOP2B SuperfamilyRas-like P-loop GTPases 8056794 3002022 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth R]7tm_1_1e7t10R1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: 7tm_1_1ECOD (1.6)
B [auth A]Rase7t10A1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
C [auth B]ANAPC4_WD40_3e7t10B1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_3ECOD (1.6)
D [auth C]G-gammae7t10C1 A: extended segmentsX: Transducin (heterotrimeric G protein), gamma chain (From Topology)H: Transducin (heterotrimeric G protein), gamma chain (From Topology)T: Transducin (heterotrimeric G protein), gamma chainF: G-gammaECOD (1.6)
F [auth S]V-sete7t10S2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
F [auth S]V-set_12e7t10S1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth B]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)
F [auth S]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
B [auth A]PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain
C [auth B]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth P]PF03002Somatostatin/Cortistatin family (Somatostatin)Somatostatin/Cortistatin family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R]Somatostatin receptor type 2,Kappa-type opioid receptor
B [auth A]Guanine nucleotide-binding protein G(i) subunit alpha-3
C [auth B]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
D [auth C]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
E [auth P]Somatostatin-14
F [auth S]scFv16---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R]IPR002074Somatostatin receptor 2Family
A [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
A [auth R]IPR000586Somatostatin receptor familyFamily
A [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
A [auth R]IPR001418Opioid receptorFamily
A [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
A [auth R]IPR000452Kappa opioid receptorFamily
A [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
B [auth A]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
B [auth A]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
B [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth A]IPR001408G-protein alpha subunit, group IFamily
C [auth B]IPR019775WD40 repeat, conserved siteConserved Site
C [auth B]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C [auth B]IPR001632G-protein beta subunit-like, WD40 repeatsDomain
C [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth B]IPR016346G-protein subunit beta 1-5Family
C [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth B]IPR001680WD40 repeatRepeat
D [auth C]IPR001770G-protein, gamma subunitFamily
D [auth C]IPR015898G-protein, gamma subunit-like domainDomain
D [auth C]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
E [auth P]IPR018142Somatostatin/Cortistatin, C-terminalDomain
E [auth P]IPR004250SomatostatinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth R]PharosP41145
B [auth A]PharosP08754
C [auth B]PharosP62873
D [auth C]PharosP59768
E [auth P]PharosP61278