7S11

Crystal structure of Fab in complex with mouse CD96 monomer

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	F_UNCLASSIFIED	e7s11C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: F_UNCLASSIFIED	ECOD (1.6)
D	F_UNCLASSIFIED	e7s11D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: F_UNCLASSIFIED	ECOD (1.6)
G [auth E]	PF00047	e7s11E1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF00047	ECOD (1.6)
J [auth F]	F_UNCLASSIFIED	e7s11F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth H]	PF07654	e7s11H2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
B [auth H]	PF07686	e7s11H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
E [auth I]	PF07654	e7s11I2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
E [auth I]	PF07686	e7s11I1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
H [auth J]	PF07654	e7s11J2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
H [auth J]	PF07686	e7s11J1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
K	PF07654	e7s11K2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
K	PF07686	e7s11K1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
C [auth L]	PF07654	e7s11L2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
C [auth L]	PF07686	e7s11L1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
F [auth M]	PF07654	e7s11M2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
F [auth M]	PF07686	e7s11M1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
I [auth N]	PF07654	e7s11N2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
I [auth N]	PF07686	e7s11N1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
L [auth O]	PF07654	e7s11O2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
L [auth O]	PF07686	e7s11O1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B [auth H], E [auth I], H [auth J], K	Heavy Chain	IGHV2	-	t-cell surface protein tactile	SAbDab (2024-04-26)
C [auth L], F [auth M], I [auth N], L [auth O]	Light Chain	IGLV1	Lambda	t-cell surface protein tactile	SAbDab (2024-04-26)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], D, G [auth E], J [auth F]	T-cell surface protein tactile	-	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process response to stimulus defense response response to stress inflammatory response response to organic substance biological process involved in interspecies interaction between organisms response to lipid response to other organism response to oxygen-containing compound response to external stimulus cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process response to stimulus defense response response to stress inflammatory response response to organic substance biological process involved in interspecies interaction between organisms response to lipid response to other organism response to oxygen-containing compound response to external stimulus response to lipopolysaccharide response to biotic stimulus response to chemical response to bacterium response to external biotic stimulus response to molecule of bacterial origin lymphocyte mediated immunity regulation of immune effector process multicellular organismal process regulation of cellular process regulation of natural killer cell cytokine production negative regulation of biological process negative regulation of lymphocyte mediated immunity negative regulation of cellular metabolic process negative regulation of natural killer cell mediated immunity cytokine production organic substance biosynthetic process leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity negative regulation of cytokine production involved in immune response regulation of natural killer cell mediated immunity regulation of biological process regulation of cytokine production involved in immune response immune response regulation of innate immune response negative regulation of immune response cellular metabolic process negative regulation of metabolic process negative regulation of immune effector process regulation of cellular metabolic process negative regulation of cellular biosynthetic process immune effector process regulation of gene expression regulation of leukocyte mediated immunity negative regulation of production of molecular mediator of immune response negative regulation of gene expression negative regulation of natural killer cell cytokine production biosynthetic process regulation of response to stimulus defense response to other organism negative regulation of response to external stimulus negative regulation of macromolecule biosynthetic process negative regulation of defense response regulation of immune response metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of production of molecular mediator of immune response negative regulation of multicellular organismal process regulation of metabolic process regulation of defense response regulation of response to biotic stimulus natural killer cell cytokine production regulation of response to external stimulus negative regulation of response to biotic stimulus cellular biosynthetic process organic substance metabolic process regulation of response to stress innate immune response regulation of cytokine production negative regulation of cellular process regulation of multicellular organismal process cytokine production involved in immune response negative regulation of macromolecule metabolic process production of molecular mediator of immune response regulation of biosynthetic process negative regulation of response to stimulus biological regulation defense response to symbiont negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of lymphocyte mediated immunity negative regulation of immune system process negative regulation of biosynthetic process immune system process negative regulation of leukocyte mediated immunity negative regulation of innate immune response regulation of type II interferon production type II interferon production negative regulation of type II interferon production	membrane cellular anatomical entity intracellular anatomical structure cytoplasm
B [auth H], E [auth I], H [auth J], K	Fab heavy chain	-	-	-
C [auth L], F [auth M], I [auth N], L [auth O]	Fab light chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], D, G [auth E], J [auth F]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth C], D, G [auth E], J [auth F]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth C], D, G [auth E], J [auth F]	IPR003599	Immunoglobulin subtype	Domain
A [auth C], D, G [auth E], J [auth F]	IPR007110	Immunoglobulin-like domain	Domain
A [auth C], D, G [auth E], J [auth F]	IPR042381	T-cell surface protein tactile	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth H], E [auth I], H [auth J], K	PCA	Parent Component: GLN RESID: AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420
C [auth L], F [auth M], I [auth N], L [auth O]	PCA	Parent Component: GLN RESID: AA0031 , AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 , 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420