7R86 | pdb_00007r86

Structure of mouse BAI1 (ADGRB1) in complex with mouse Nogo receptor (RTN4R)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	TSP-1 type 1 repeat	8105850	3000814	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	L domain-like	8088499	3001010	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	L domain-like	8088499	3001010	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Arm, ARM_PUB	e7r86D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)
C	Arm, ARM_PUB	e7r86C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)
B	Arm, ARM_PUB	e7r86B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)
A	Arm, ARM_PUB	e7r86A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00090	Thrombospondin type 1 domain (TSP_1)	Thrombospondin type 1 domain		Domain
A, B	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Vasculostatin-120	molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity protein binding binding PDZ domain binding protein domain specific binding lipid binding lipopolysaccharide binding carbohydrate derivative binding modified amino acid binding ion binding anion binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity protein binding binding PDZ domain binding protein domain specific binding lipid binding lipopolysaccharide binding carbohydrate derivative binding modified amino acid binding ion binding anion binding phospholipid binding phosphatidylserine binding small molecule binding	membrane organization import into cell transport establishment of localization vesicle-mediated transport cellular component organization localization phagocytosis, engulfment membrane invagination cellular process phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination membrane organization import into cell transport establishment of localization vesicle-mediated transport cellular component organization localization phagocytosis, engulfment membrane invagination cellular process phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination positive regulation of nervous system development multicellular organismal process regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development regulation of multicellular organismal process regulation of synapse structure or activity synapse organization regulation of synapse assembly regulation of biological quality positive regulation of cellular process system development developmental process regulation of multicellular organismal development regulation of biological process positive regulation of cellular component biogenesis biological regulation nervous system development regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization cell junction organization positive regulation of multicellular organismal process synapse assembly positive regulation of synapse assembly actin cytoskeleton organization postsynapse organization postsynaptic cytoskeleton organization organelle organization postsynaptic actin cytoskeleton organization actin filament-based process cytoskeleton organization negative regulation of post-translational protein modification regulation of protein modification process negative regulation of biological process regulation of protein ubiquitination regulation of primary metabolic process protein ubiquitination negative regulation of protein modification process negative regulation of cellular process protein metabolic process negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus muscle structure development animal organ development muscle organ development cellular response to stimulus cell surface receptor signaling pathway signaling signal transduction cell communication negative regulation of locomotion regulation of cell motility endothelial cell migration negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration negative regulation of cell motility cell migration cell motility locomotion negative regulation of cell migration regulation of synaptic plasticity trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication regulation of syncytium formation by plasma membrane fusion cellular developmental process cell-cell fusion muscle cell differentiation myotube differentiation cell differentiation positive regulation of myoblast fusion myoblast fusion syncytium formation by cell-cell fusion regulation of myoblast fusion positive regulation of syncytium formation by plasma membrane fusion striated muscle cell differentiation reactive oxygen species biosynthetic process regulation of biosynthetic process positive regulation of reactive oxygen species biosynthetic process reactive oxygen species metabolic process regulation of reactive oxygen species biosynthetic process positive regulation of reactive oxygen species metabolic process positive regulation of metabolic process biosynthetic process positive regulation of biosynthetic process regulation of reactive oxygen species metabolic process defense response to Gram-negative bacterium defense response to bacterium response to bacterium catabolic process macromolecule catabolic process negative regulation of protein catabolic process negative regulation of catabolic process protein catabolic process regulation of catabolic process regulation of protein catabolic process G protein-coupled receptor signaling pathway angiogenesis regulation of vasculature development tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development anatomical structure morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis negative regulation of multicellular organismal process apoptotic cell clearance engulfment of apoptotic cell phagocytosis, recognition cell recognition	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane somatodendritic compartment cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse neuron spine dendritic spine postsynaptic density neuron to neuron synapse postsynaptic specialization organelle asymmetric synapse intracellular anatomical structure perinuclear region of cytoplasm cytoplasm phagocytic cup
A, B	Reticulon-4 receptor	glycosaminoglycan binding chondroitin sulfate binding binding carbohydrate derivative binding sulfur compound binding protein binding signaling receptor binding Roundabout binding molecular transducer activity signaling receptor activity transmembrane signaling receptor activity neuregulin receptor activity ganglioside GM1 binding organic acid binding glycosaminoglycan binding chondroitin sulfate binding binding carbohydrate derivative binding sulfur compound binding protein binding signaling receptor binding Roundabout binding molecular transducer activity signaling receptor activity transmembrane signaling receptor activity neuregulin receptor activity ganglioside GM1 binding organic acid binding ceramide binding sphingolipid binding glycolipid binding ion binding glycosphingolipid binding ganglioside binding anion binding lipid binding carboxylic acid binding small molecule binding ganglioside GT1b binding protein-containing complex binding heparin binding	developmental process corpus callosum development multicellular organismal process head development forebrain development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development telencephalon development system development axon extension developmental process corpus callosum development multicellular organismal process head development forebrain development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development telencephalon development system development axon extension regulation of growth regulation of cellular process axonogenesis regulation of cellular component size developmental growth cell projection organization negative regulation of biological process regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development cell projection morphogenesis neuron differentiation negative regulation of growth neuron projection morphogenesis cell differentiation regulation of biological quality regulation of biological process negative regulation of cellular component organization regulation of cell projection organization negative regulation of cell growth developmental growth involved in morphogenesis generation of neurons negative regulation of axonogenesis negative regulation of developmental growth negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell growth cell morphogenesis regulation of axon extension cellular component organization regulation of nervous system development neurogenesis negative regulation of neurogenesis regulation of extent of cell growth regulation of axonogenesis negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation cellular component organization or biogenesis negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of cell size neuron projection extension regulation of multicellular organismal development regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth negative regulation of developmental process biological regulation growth negative regulation of axon extension axon development regulation of cell growth cell morphogenesis involved in neuron differentiation negative regulation of neuron projection development anatomical structure morphogenesis negative regulation of cell development neuron development cellular process regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity cellular response to stimulus positive regulation of cell communication small GTPase-mediated signal transduction positive regulation of signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction positive regulation of biological process regulation of signal transduction intracellular signal transduction Rho protein signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of signaling positive regulation of intracellular signal transduction regulation of Rho protein signal transduction positive regulation of Rho protein signal transduction regulation of response to stimulus regulation of cell communication positive regulation of small GTPase mediated signal transduction positive regulation of signaling regulation of cellular response to stress negative regulation of neuron projection regeneration regeneration neuron projection regeneration response to wounding regulation of axon regeneration response to external stimulus negative regulation of response to external stimulus regulation of neuron projection regeneration negative regulation of axon regeneration regulation of response to external stimulus response to axon injury regulation of response to wounding cellular response to stress axon regeneration regulation of response to stress response to stress negative regulation of response to stimulus negative regulation of response to wounding cell surface receptor signaling pathway cellular component biogenesis cellular component assembly regulation of postsynapse assembly cell junction assembly regulation of synapse structure or activity synapse organization regulation of synapse assembly postsynapse organization postsynapse assembly regulation of postsynapse organization regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly chemotaxis negative chemotaxis taxis response to chemical locomotion axon guidance neuron projection guidance neuronal signal transduction	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane growth cone axon cell projection somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth membrane microdomain membrane raft presynapse synapse cell junction glutamatergic synapse dendrite dendritic tree dendritic shaft membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR036445	GPCR family 2, extracellular hormone receptor domain superfamily	Homologous Superfamily
C, D	IPR000832	GPCR, family 2, secretin-like	Family
C, D	IPR000203	GPS motif	Conserved Site
C, D	IPR017981	GPCR, family 2-like, 7TM	Domain
C, D	IPR008077	GPCR, family 2, brain-specific angiogenesis inhibitor	Family
C, D	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
C, D	IPR001879	GPCR, family 2, extracellular hormone receptor domain	Domain
C, D	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily
C, D	IPR043838	Adhesion G protein-coupled receptor B, N-terminal domain	Domain
C, D	IPR032471	AGRL2-4 , GAIN subdomain A	Domain
C, D	IPR046338	GAIN domain superfamily	Homologous Superfamily
C, D	IPR057244	GAIN, subdomain B	Domain
A, B	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B	IPR001611	Leucine-rich repeat	Repeat
A, B	IPR050541	Leucine-rich repeat and transmembrane domain-containing protein	Family
A, B	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.