Desensitized state of GluA1/2 AMPA receptor in complex with TARP-gamma 8 (TMD-LBD)
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F [auth I] | SCOP2B Superfamily | Claudin-like | 8094098 | 3002606 | SCOP2B (2022-06-29) |
| E [auth J] | SCOP2B Superfamily | Claudin-like | 8094098 | 3002606 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth I] | tRNA-synt_2d | e7qhhI1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: tRNA-synt_2d | ECOD (v294.1) |
| E [auth J] | tRNA-synt_2d | e7qhhJ1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: tRNA-synt_2d | ECOD (v294.1) |
| D | tRNA-synt_2d | e7qhhD1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: tRNA-synt_2d | ECOD (v294.1) |
| B | tRNA-synt_2d | e7qhhB1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: tRNA-synt_2d | ECOD (v294.1) |
| C | tRNA-synt_2d | e7qhhC1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: tRNA-synt_2d | ECOD (v294.1) |
| A | Ribosomal_L27A, PF29471 | e7qhhA1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ribosomal_L27A, PF29471 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth I] | 1.20.140.150 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (utative) |
| E [auth J] | 1.20.140.150 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E [auth J], F [auth I] | PF00822 | PMP-22/EMP/MP20/Claudin family (PMP22_Claudin) | PMP-22/EMP/MP20/Claudin family | - | Family |
| PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family | |
| PF10613 | Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) | Ligated ion channel L-glutamate- and glycine-binding site | This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ... | Domain | |
| PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Glutamate-gated Ion Channel (GIC) family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














