Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyInlB B repeat-like8053906 3002244 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyE set domains8055069 3000070 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyL domain-like8036334 3001010 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyE set domains8055069 3000070 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyInlB B repeat-like8053906 3002244 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyL domain-like8036334 3001010 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyE set domains8055069 3000070 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyL domain-like8036334 3001010 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF08191e7pv9A2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08191ECOD (1.6)
APF12799e7pv9A3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF12799ECOD (1.6)
APF12354e7pv9A1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF12354ECOD (1.6)
APF09479e7pv9A4 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF09479ECOD (1.6)
BPF08191e7pv9B2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08191ECOD (1.6)
BPF12799e7pv9B3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF12799ECOD (1.6)
BPF12354e7pv9B1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF12354ECOD (1.6)
BPF09479e7pv9B4 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF09479ECOD (1.6)
CPF08191e7pv9C2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08191ECOD (1.6)
CPF12799e7pv9C1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF12799ECOD (1.6)
CPF12354e7pv9C3 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF12354ECOD (1.6)
CPF09479e7pv9C4 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF09479ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF09479Listeria-Bacteroides repeat domain (List_Bact_rpt) (Flg_new)Listeria-Bacteroides repeat domain (List_Bact_rpt)This model describes a conserved core region of about 43 residues [1] which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies ...This model describes a conserved core region of about 43 residues [1] which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies [2].
Domain
A, B, C
PF12354Bacterial adhesion/invasion protein N terminal (Internalin_N)Bacterial adhesion/invasion protein N terminalThis domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally i ...This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally important. Internalin mediates bacterial adhesion and invasion of epithelial cells in the human intestine through specific interaction with its host cell receptor E-cadherin. This family is the N terminal of internalin, the cap domain of the protein. The cap domain is conserved between different internalin types. The cap domain does not interact with E cadherin, therefore its function is presumably structural: capping the hydrophobic core.
Domain
A, B, C
PF12799Leucine Rich repeats (2 copies) (LRR_4)Leucine Rich repeats (2 copies)- Repeat
A, B, C
PF08191LRR adjacent (LRR_adjacent)LRR adjacent- Family