7PT6

Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth 2]PF17207e7pt623 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
B [auth 2]PF17855e7pt622 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
B [auth 2]PF14551e7pt625 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
B [auth 2]PF00493e7pt624 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
B [auth 2]F_UNCLASSIFIEDe7pt621 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
K [auth B]PF17207e7pt6B5 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
K [auth B]PF17855e7pt6B4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
K [auth B]PF14551e7pt6B1 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
K [auth B]PF00493e7pt6B3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
K [auth B]F_UNCLASSIFIEDe7pt6B2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
D [auth 4]PF17207e7pt643 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
D [auth 4]PF17855e7pt645 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
D [auth 4]PF14551e7pt644 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
D [auth 4]PF00493e7pt642 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
D [auth 4]PF17207e7pt641 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF17207ECOD (1.6)
M [auth D]PF17207e7pt6D3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
M [auth D]PF17855e7pt6D5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
M [auth D]PF14551e7pt6D4 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
M [auth D]PF00493e7pt6D2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
M [auth D]PF17207e7pt6D1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF17207ECOD (1.6)
E [auth 5]PF17207e7pt652 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
E [auth 5]PF17855e7pt653 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
E [auth 5]PF14551e7pt651 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
E [auth 5]PF00493e7pt655 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
E [auth 5]F_UNCLASSIFIEDe7pt654 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
N [auth E]PF17207e7pt6E3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
N [auth E]PF17855e7pt6E2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
N [auth E]PF14551e7pt6E1 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
N [auth E]PF00493e7pt6E4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
N [auth E]F_UNCLASSIFIEDe7pt6E5 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
F [auth 6]PF17207e7pt662 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
F [auth 6]PF17855e7pt665 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
F [auth 6]PF14551e7pt661 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
F [auth 6]PF00493e7pt664 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
F [auth 6]PF17207e7pt663 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF17207ECOD (1.6)
O [auth F]PF17207e7pt6F2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
O [auth F]PF17855e7pt6F3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
O [auth F]PF14551e7pt6F5 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
O [auth F]PF00493e7pt6F1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
O [auth F]PF17207e7pt6F4 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF17207ECOD (1.6)
G [auth 7]PF17207e7pt672 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
G [auth 7]PF17855e7pt673 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
G [auth 7]PF14551e7pt675 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
G [auth 7]PF00493e7pt671 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
G [auth 7]F_UNCLASSIFIEDe7pt674 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
P [auth G]PF17207e7pt6G1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
P [auth G]PF17855e7pt6G5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
P [auth G]PF14551e7pt6G2 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
P [auth G]PF00493e7pt6G3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
P [auth G]F_UNCLASSIFIEDe7pt6G4 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
H [auth 8]PF00069e7pt681 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: PF00069ECOD (1.6)
Q [auth H]PF00069e7pt6H1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: PF00069ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 2],
K [auth B]
PF12619Mini-chromosome maintenance protein 2 (MCM2_N)Mini-chromosome maintenance protein 2- Family
B [auth 2],
K [auth B]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins.Domain
B [auth 2],
K [auth B]
PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
B [auth 2],
K [auth B]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
B [auth 2],
K [auth B]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
C [auth 3],
L [auth C]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins.Domain
C [auth 3],
L [auth C]
PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
C [auth 3],
L [auth C]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
C [auth 3],
L [auth C]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
D [auth 4],
M [auth D]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins.Domain
D [auth 4],
M [auth D]
PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
D [auth 4],
M [auth D]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
D [auth 4],
M [auth D]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
E [auth 5],
N [auth E]
PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
E [auth 5],
N [auth E]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
E [auth 5],
N [auth E]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
F [auth 6],
O [auth F]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins.Domain
F [auth 6],
O [auth F]
PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
F [auth 6],
O [auth F]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
F [auth 6],
O [auth F]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
G [auth 7],
P [auth G]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins.Domain
G [auth 7],
P [auth G]
PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
G [auth 7],
P [auth G]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
G [auth 7],
P [auth G]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
H [auth 8],
Q [auth H]
PF00069Protein kinase domain (Pkinase)Protein kinase domain- Domain
I [auth 9],
R [auth I]
PF08630Dfp1/Him1, central region (Dfp1_Him1_M)Dfp1/Him1, central region- Family
I [auth 9],
R [auth I]
PF07535DBF zinc finger (zf-DBF)DBF zinc fingerThis domain is predicted to bind metal ions [1] and is often found associated with Pfam:PF00533 and Pfam:PF02178. It was first identified in the Drosophila chiffon gene product [2], and is associated with initiation of DNA replication.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1],
J [auth A]
Undefined Mcm4 flexible N-terminal tail---
B [auth 2],
K [auth B]
DNA replication licensing factor MCM2
C [auth 3],
L [auth C]
DNA replication licensing factor MCM3
D [auth 4],
M [auth D]
DNA replication licensing factor MCM4
E [auth 5],
N [auth E]
Minichromosome maintenance protein 5
F [auth 6],
O [auth F]
DNA replication licensing factor MCM6
G [auth 7],
P [auth G]
DNA replication licensing factor MCM7
H [auth 8],
Q [auth H]
Cell division control protein 7
I [auth 9],
R [auth I]
DDK kinase regulatory subunit DBF4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 2],
K [auth B]
IPR031327Mini-chromosome maintenance proteinFamily
B [auth 2],
K [auth B]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
B [auth 2],
K [auth B]
IPR001208MCM domainDomain
B [auth 2],
K [auth B]
IPR041562MCM, AAA-lid domainDomain
B [auth 2],
K [auth B]
IPR008045DNA replication licensing factor Mcm2Family
B [auth 2],
K [auth B]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2],
K [auth B]
IPR027925MCM, N-terminal domainDomain
B [auth 2],
K [auth B]
IPR033762MCM OB domainDomain
B [auth 2],
K [auth B]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth 3],
L [auth C]
IPR031327Mini-chromosome maintenance proteinFamily
C [auth 3],
L [auth C]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
C [auth 3],
L [auth C]
IPR003593AAA+ ATPase domainDomain
C [auth 3],
L [auth C]
IPR001208MCM domainDomain
C [auth 3],
L [auth C]
IPR041562MCM, AAA-lid domainDomain
C [auth 3],
L [auth C]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3],
L [auth C]
IPR027925MCM, N-terminal domainDomain
C [auth 3],
L [auth C]
IPR008046DNA replication licensing factor Mcm3Family
C [auth 3],
L [auth C]
IPR033762MCM OB domainDomain
C [auth 3],
L [auth C]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 4],
M [auth D]
IPR031327Mini-chromosome maintenance proteinFamily
D [auth 4],
M [auth D]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
D [auth 4],
M [auth D]
IPR001208MCM domainDomain
D [auth 4],
M [auth D]
IPR041562MCM, AAA-lid domainDomain
D [auth 4],
M [auth D]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 4],
M [auth D]
IPR027925MCM, N-terminal domainDomain
D [auth 4],
M [auth D]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
D [auth 4],
M [auth D]
IPR008047Mini-chromosome maintenance complex protein 4Family
D [auth 4],
M [auth D]
IPR033762MCM OB domainDomain
D [auth 4],
M [auth D]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth 5],
N [auth E]
IPR031327Mini-chromosome maintenance proteinFamily
E [auth 5],
N [auth E]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
E [auth 5],
N [auth E]
IPR001208MCM domainDomain
E [auth 5],
N [auth E]
IPR041562MCM, AAA-lid domainDomain
E [auth 5],
N [auth E]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 5],
N [auth E]
IPR027925MCM, N-terminal domainDomain
E [auth 5],
N [auth E]
IPR033762MCM OB domainDomain
E [auth 5],
N [auth E]
IPR008048DNA replication licensing factor Mcm5Family
E [auth 5],
N [auth E]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 6],
O [auth F]
IPR008049DNA replication licensing factor Mcm6Family
F [auth 6],
O [auth F]
IPR041024Mcm6, C-terminal winged-helix domainDomain
F [auth 6],
O [auth F]
IPR031327Mini-chromosome maintenance proteinFamily
F [auth 6],
O [auth F]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
F [auth 6],
O [auth F]
IPR001208MCM domainDomain
F [auth 6],
O [auth F]
IPR041562MCM, AAA-lid domainDomain
F [auth 6],
O [auth F]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 6],
O [auth F]
IPR027925MCM, N-terminal domainDomain
F [auth 6],
O [auth F]
IPR033762MCM OB domainDomain
F [auth 6],
O [auth F]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth 7],
P [auth G]
IPR031327Mini-chromosome maintenance proteinFamily
G [auth 7],
P [auth G]
IPR008050DNA replication licensing factor Mcm7Family
G [auth 7],
P [auth G]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
G [auth 7],
P [auth G]
IPR003593AAA+ ATPase domainDomain
G [auth 7],
P [auth G]
IPR001208MCM domainDomain
G [auth 7],
P [auth G]
IPR041562MCM, AAA-lid domainDomain
G [auth 7],
P [auth G]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth 7],
P [auth G]
IPR027925MCM, N-terminal domainDomain
G [auth 7],
P [auth G]
IPR033762MCM OB domainDomain
G [auth 7],
P [auth G]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth 8],
Q [auth H]
IPR000719Protein kinase domainDomain
H [auth 8],
Q [auth H]
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
H [auth 8],
Q [auth H]
IPR008271Serine/threonine-protein kinase, active siteActive Site
I [auth 9],
R [auth I]
IPR013939Regulatory subunit Dfp1/Him1, central regionDomain
I [auth 9],
R [auth I]
IPR006572Zinc finger, DBF-typeDomain
I [auth 9],
R [auth I]
IPR038545DBF-type zinc finger superfamilyHomologous Superfamily
I [auth 9],
R [auth I]
IPR036420BRCT domain superfamilyHomologous Superfamily