7N8Y
Oxidized PheRS G318W from Salmonella enterica serovar Typhimurium
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 8105348 | 4001782 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Class II aaRS and biotin synthetases | 8105349 | 3000058 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8105349 | 3000058 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA-synt_2d | e7n8yA1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2d | ECOD (1.6) |
C | tRNA-synt_2d | e7n8yC1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2d | ECOD (1.6) |
B | tRNA_bind_1 | e7n8yB3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_bind_1 | ECOD (1.6) |
B | B3_4 | e7n8yB1 | A: beta complex topology | X: PheT/TilS domain (From Topology) | H: PheT/TilS domain (From Topology) | T: PheT/TilS domain | F: B3_4 | ECOD (1.6) |
B | B5 | e7n8yB5 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: B5 | ECOD (1.6) |
B | pheT | e7n8yB6 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: pheT | ECOD (1.6) |
B | FDX-ACB | e7n8yB4 | A: a+b two layers | X: Alpha-beta plaits | H: Anticodon-binding domain of PheRS (From Topology) | T: Anticodon-binding domain of PheRS | F: FDX-ACB | ECOD (1.6) |
B | tRNA-synt_2d_1 | e7n8yB2 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2d_1 | ECOD (1.6) |
D | tRNA_bind_1 | e7n8yD3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_bind_1 | ECOD (1.6) |
D | B3_4 | e7n8yD1 | A: beta complex topology | X: PheT/TilS domain (From Topology) | H: PheT/TilS domain (From Topology) | T: PheT/TilS domain | F: B3_4 | ECOD (1.6) |
D | B5 | e7n8yD5 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: B5 | ECOD (1.6) |
D | pheT | e7n8yD6 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: pheT | ECOD (1.6) |
D | FDX-ACB | e7n8yD4 | A: a+b two layers | X: Alpha-beta plaits | H: Anticodon-binding domain of PheRS (From Topology) | T: Anticodon-binding domain of PheRS | F: FDX-ACB | ECOD (1.6) |
D | tRNA-synt_2d_1 | e7n8yD2 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2d_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01409 | tRNA synthetases class II core domain (F) (tRNA-synt_2d) | tRNA synthetases class II core domain (F) | Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. | Domain | |
PF03483 | B3/4 domain (B3_4) | B3/4 domain | This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins. | Domain | |
PF03484 | tRNA synthetase B5 domain (B5) | tRNA synthetase B5 domain | This domain is found in phenylalanine-tRNA synthetase beta subunits. | Domain | |
PF03147 | Ferredoxin-fold anticodon binding domain (FDX-ACB) | Ferredoxin-fold anticodon binding domain | This is the anticodon binding domain found in some phenylalanyl tRNA synthetases. The domain has a ferredoxin fold [1,2]. | Domain | |
PF17759 | Phenylalanyl tRNA synthetase beta chain CLM domain (tRNA_synthFbeta) | Phenylalanyl tRNA synthetase beta chain CLM domain | This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase [1]. | Domain | |
PF01588 | Putative tRNA binding domain (tRNA_bind) | Putative tRNA binding domain | This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [2], human tyrosyl-tRNA synthetase [1], and endothelial-monocyte activating polypept ... | Domain |