7MQA

Cryo-EM structure of the human SSU processome, state post-A1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth LA]SCOP2B SuperfamilyL30e-like8063978 3001739 SCOP2B (2022-06-29)
L [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082685 3000100 SCOP2B (2022-06-29)
M [auth LD]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2B (2022-06-29)
M [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2B (2022-06-29)
O [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins8063426 3000135 SCOP2B (2022-06-29)
JA [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2B (2022-06-29)
JA [auth NF]SCOP2B SuperfamilyHomeodomain-like8052958 3000001 SCOP2B (2022-06-29)
KA [auth NG]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
NA [auth NL]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8036137 3000118 SCOP2B (2022-06-29)
NA [auth NL]SCOP2B SuperfamilyS13-like H2TH domain8090728 3000053 SCOP2B (2022-06-29)
OA [auth NM]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
PA [auth NO]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
QA [auth NP]SCOP2B SuperfamilyWinged helix DNA-binding domain8089318 3000034 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
AB [auth SD]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063658 3000118 SCOP2B (2022-06-29)
ZA [auth SC]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063658 3000118 SCOP2B (2022-06-29)
BB [auth SE]SCOP2B SuperfamilyL30e-like8043738 3001739 SCOP2B (2022-06-29)
CB [auth SF]SCOP2B SuperfamilyL30e-like8043738 3001739 SCOP2B (2022-06-29)
GB [auth SJ]SCOP2B Superfamilyalpha/beta knot8084459 3001122 SCOP2B (2022-06-29)
HB [auth SK]SCOP2B Superfamilyalpha/beta knot8084459 3001122 SCOP2B (2022-06-29)
F [auth L5]SCOP2B SuperfamilyRibosomal protein S78066003 3000799 SCOP2B (2022-06-29)
G [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
I [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth L9]PF00163,PF01479e7mqaL91 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
K [auth LA]PF01248e7mqaLA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
L [auth LC]PF00380e7mqaLC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
M [auth LD]PF00366,PF16205e7mqaLD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
N [auth LF]PF01282e7mqaLF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
O [auth LG]PF01200e7mqaLG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
R [auth LJ]PF00400e7mqaLJ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
R [auth LJ]PF09384e7mqaLJ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF09384ECOD (1.6)
S [auth LK]PF04003e7mqaLK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
V [auth LN]F_UNCLASSIFIEDe7mqaLN1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
V [auth LN]PF00400e7mqaLN2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]F_UNCLASSIFIEDe7mqaLO1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
W [auth LO]PF00400e7mqaLO2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]PF04003e7mqaLO3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
X [auth LP]PF08640e7mqaLP1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF08640ECOD (1.6)
Y [auth LQ]PF00400e7mqaLQ2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Y [auth LQ]PF04003e7mqaLQ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
Z [auth LR]PF00400e7mqaLR2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Z [auth LR]PF00400e7mqaLR1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
Z [auth LR]PF08625e7mqaLR3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF08625ECOD (1.6)
BA [auth LT]PF00400e7mqaLT1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
BA [auth LT]PF00400,PF12894e7mqaLT2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400,PF12894ECOD (1.6)
BA [auth LT]PF04192e7mqaLT3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04192ECOD (1.6)
FA [auth LZ]PF00163,PF01479e7mqaLZ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
JA [auth NF]PF08069e7mqaNF1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
JA [auth NF]PF00312e7mqaNF2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
KA [auth NG]PF00411e7mqaNG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
LA [auth NH]PF17403e7mqaNH5 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17403ECOD (1.6)
LA [auth NH]PF17406e7mqaNH2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17406ECOD (1.6)
LA [auth NH]PF17404e7mqaNH4 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17404ECOD (1.6)
LA [auth NH]PF17407e7mqaNH6 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17407ECOD (1.6)
LA [auth NH]PF03813e7mqaNH1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF03813ECOD (1.6)
LA [auth NH]PF17405e7mqaNH3 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF17405ECOD (1.6)
NA [auth NL]F_UNCLASSIFIEDe7mqaNL2 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: F_UNCLASSIFIEDECOD (1.6)
NA [auth NL]PF00398e7mqaNL1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF00398ECOD (1.6)
D [auth L3]PF00416e7mqaL31 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
OA [auth NM]PF01015e7mqaNM1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
OA [auth NM]PF01015e7mqaNM2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
PA [auth NO]PF00410e7mqaNO2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
PA [auth NO]PF00410e7mqaNO1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
QA [auth NP]PF01090e7mqaNP1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
RA [auth NQ]PF01667e7mqaNQ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
UA [auth NT]PF01599e7mqaNT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
VA [auth NU]PF00833e7mqaNU1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
XA [auth SA]PF01798e7mqaSA1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: PF01798ECOD (1.6)
XA [auth SA]PF01798e7mqaSA2 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF01798ECOD (1.6)
XA [auth SA]PF08156e7mqaSA3 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF08156ECOD (1.6)
E [auth L4]PF00900e7mqaL41 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth L4]PF00467,PF16121e7mqaL43 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth L4]PF00900,PF01479,PF08071e7mqaL42 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
AB [auth SD]PF01269e7mqaSD1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
ZA [auth SC]PF01269e7mqaSC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
BB [auth SE]PF01248e7mqaSE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
CB [auth SF]PF01248e7mqaSF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
EB [auth SH]PF01137e7mqaSH2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: PF01137ECOD (1.6)
EB [auth SH]PF05189e7mqaSH1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: PF05189ECOD (1.6)
GB [auth SJ]PF03587e7mqaSJ1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
HB [auth SK]PF03587e7mqaSK1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
IB [auth SL]PF04900e7mqaSL1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: PIN domain-likeF: PF04900ECOD (1.6)
F [auth L5]PF00177e7mqaL51 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
MB [auth SR]PF00164e7mqaSR1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
QB [auth SW]PF17903e7mqaSW2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
QB [auth SW]PF22891e7mqaSW1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF22891ECOD (1.6)
G [auth L6]PF01092e7mqaL61 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
H [auth L7]PF01251e7mqaL71 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
I [auth L8]PF01201e7mqaL81 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth L9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth LA]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
L [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
N [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
O [auth LG]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
P [auth LH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
R [auth LJ]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
R [auth LJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
S [auth LK],
T [auth LL]
PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
S [auth LK],
T [auth LL]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
U [auth LM]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
V [auth LN]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth LO]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
W [auth LO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
X [auth LP]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Family
Y [auth LQ]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
Y [auth LQ]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
Y [auth LQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
AA [auth LS]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth LT]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.Domain
BA [auth LT]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
BA [auth LT]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CA [auth LU]PF08662Eukaryotic translation initiation factor eIF2A (eIF2A)Eukaryotic translation initiation factor eIF2A- Repeat
CA [auth LU]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
CA [auth LU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DA [auth LW]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domainThis C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [1].Domain
DA [auth LW]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth LZ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
FA [auth LZ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
GA [auth NA]PF04006Mpp10 protein (Mpp10)Mpp10 protein- Family
IA [auth ND]PF08157NUC129 domain (NUC129)NUC129 domainThis C terminal domain is found in a novel family of hypothetical nucleolar proteins [1].Domain
JA [auth NF]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
JA [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
KA [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
LA [auth NH]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
LA [auth NH]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
LA [auth NH]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
LA [auth NH]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
LA [auth NH]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
LA [auth NH]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
MA [auth NI]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1].Domain
MA [auth NI]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2].Domain
NA [auth NL]PF00398Ribosomal RNA adenine dimethylase (RrnaAD)Ribosomal RNA adenine dimethylase- Domain
OA [auth NM]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
PA [auth NO]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
QA [auth NP]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
RA [auth NQ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
TA [auth NS]PF04408Helicase associated domain (HA2), winged-helix (HA2_N)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
TA [auth NS]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
TA [auth NS]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
TA [auth NS]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
UA [auth NT]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
VA [auth NU]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
XA [auth SA]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
XA [auth SA]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
E [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth L4]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth L4]PF00467KOW motif (KOW)KOW motif- Family
YA [auth SB]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
YA [auth SB]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
AB [auth SD],
ZA [auth SC]
PF01269Fibrillarin (Fibrillarin)Fibrillarin- Domain
BB [auth SE],
CB [auth SF]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
DB [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EB [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
EB [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
FB [auth SI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1].Domain
GB [auth SJ],
HB [auth SK]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
IB [auth SL]PF04900Fcf1 (Fcf1)Fcf1- Family
JB [auth SM]PF04427Brix domain (Brix)Brix domain- Domain
KB [auth SP]PF20416U3 small nucleolar RNA-associated protein 20, C-terminal (UTP20_C)U3 small nucleolar RNA-associated protein 20, C-terminalThis domain is found towards the C-terminal the U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and its human homologue, also known as DRIM (Down-Regulated In Metastasis). DRIM is differentially expressed in metastatic and non-metasta ...This domain is found towards the C-terminal the U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and its human homologue, also known as DRIM (Down-Regulated In Metastasis). DRIM is differentially expressed in metastatic and non-metastatic human breast carcinoma cells [1]. Proteins of this entry are involved in processing of non-coding RNA as components of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA [2,3]. UTP20 is a huge alpha-solenoid that functions as a scaffold [4,5].
Domain
KB [auth SP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminalThis domain is found towards the N-terminal of eukaryotic proteins including U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and the homologue from human, also known as DRIM (Down-Regulated In Metastasis) (Swiss:O75691), which is diff ...This domain is found towards the N-terminal of eukaryotic proteins including U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and the homologue from human, also known as DRIM (Down-Regulated In Metastasis) (Swiss:O75691), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells [1]. Proteins of this entry are involved in processing of non-coding RNA as components of of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA [2,3]. UTP20 is a huge alpha-solenoid structure that functions as a scaffold [4,5].
Domain
F [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LB [auth SQ]PF08698Fcf2 pre-rRNA processing (Fcf2)Fcf2 pre-rRNA processing- Family
MB [auth SR]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
NB [auth SS]PF04615Utp14 protein (Utp14)Utp14 protein- Family
SB [auth SY]PF03998Utp11 protein (Utp11)Utp11 protein- Family
G [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
I [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L0]5'ETS rRNA---
J [auth L9]40S ribosomal protein S9
K [auth LA]40S ribosomal protein S12
L [auth LC]40S ribosomal protein S16
M [auth LD]40S ribosomal protein S11
N [auth LF]40S ribosomal protein S24
O [auth LG]40S ribosomal protein S28
P [auth LH]WD repeat-containing protein 75
Q [auth LI]Nucleolar protein 11---
R [auth LJ]U3 small nucleolar RNA-associated protein 15 homolog
S [auth LK],
T [auth LL]
WD repeat-containing protein 43
B [auth L1]18S rRNA---
U [auth LM]HEAT repeat-containing protein 1
V [auth LN]U3 small nucleolar RNA-associated protein 4 homolog
W [auth LO]Periodic tryptophan protein 2 homolog
X [auth LP]U3 small nucleolar RNA-associated protein 6 homolog
Y [auth LQ]WD repeat-containing protein 3
Z [auth LR]Transducin beta-like protein 3
AA [auth LS]U3 small nucleolar RNA-associated protein 18 homolog
BA [auth LT]WD repeat-containing protein 36
CA [auth LU]DDB1- and CUL4-associated factor 13
DA [auth LW]WD repeat-containing protein 46
C [auth L2]U3 snoRNA---
EA [auth LY]Active regulator of SIRT1
FA [auth LZ]U3 small nucleolar ribonucleoprotein protein IMP3
GA [auth NA]U3 small nucleolar ribonucleoprotein protein MPP10
HA [auth NB]Something about silencing protein 10
IA [auth ND]Nucleolar protein 7
JA [auth NF]40S ribosomal protein S13
KA [auth NG]40S ribosomal protein S14
LA [auth NH]Nucleolar protein 6
MA [auth NI]Ribosomal RNA-processing protein 7 homolog A
NA [auth NL]Probable dimethyladenosine transferase
D [auth L3]40S ribosomal protein S18---
OA [auth NM]40S ribosomal protein S3a
PA [auth NO]40S ribosomal protein S15a
QA [auth NP]40S ribosomal protein S19
RA [auth NQ]40S ribosomal protein S27
SA [auth NR]RRP12-like protein---
TA [auth NS]Probable ATP-dependent RNA helicase DHX37
UA [auth NT]Ubiquitin-40S ribosomal protein S27a
VA [auth NU]40S ribosomal protein S17
WA [auth NV]Exosome component 10
XA [auth SA]Nucleolar protein 56
E [auth L4]40S ribosomal protein S4, X isoform
YA [auth SB]Nucleolar protein 58
AB [auth SD],
ZA [auth SC]
rRNA 2'-O-methyltransferase fibrillarin
BB [auth SE],
CB [auth SF]
NHP2-like protein 1
DB [auth SG]U3 small nucleolar RNA-interacting protein 2
EB [auth SH]RNA 3'-terminal phosphate cyclase-like protein
FB [auth SI]Ribosome biogenesis protein BMS1 homolog
GB [auth SJ],
HB [auth SK]
Ribosomal RNA small subunit methyltransferase NEP1
IB [auth SL]rRNA-processing protein FCF1 homolog
JB [auth SM]U3 small nucleolar ribonucleoprotein protein IMP4
KB [auth SP]Small subunit processome component 20 homolog
F [auth L5]40S ribosomal protein S5
LB [auth SQ]Deoxynucleotidyltransferase terminal-interacting protein 2
MB [auth SR]40S ribosomal protein S23
NB [auth SS]U3 small nucleolar RNA-associated protein 14 homolog A
OB [auth ST]Nucleolar protein 14---
PB [auth SU]Nucleolar complex protein 4 homolog---
QB [auth SW]RNA-binding protein PNO1
RB [auth SX]Unassigned peptides---
SB [auth SY]Probable U3 small nucleolar RNA-associated protein 11
TB [auth SZ]Bystin---
G [auth L6]40S ribosomal protein S6
H [auth L7]40S ribosomal protein S7
I [auth L8]40S ribosomal protein S8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth L9]IPR002942RNA-binding S4 domainDomain
J [auth L9]IPR022801Small ribosomal subunit protein uS4Family
J [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth LA]IPR000530Small ribosomal subunit protein eS12Family
K [auth LA]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth LA]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
K [auth LA]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth LC]IPR000754Small ribosomal subunit protein uS9Family
L [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth LD]IPR000266Small ribosomal subunit protein uS17Family
M [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
N [auth LF]IPR001976Small ribosomal subunit protein eS24Family
N [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
O [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
O [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth LG]IPR000289Small ribosomal subunit protein eS28Family
P [auth LH]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
P [auth LH]IPR001680WD40 repeatRepeat
P [auth LH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR019775WD40 repeat, conserved siteConserved Site
R [auth LJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR001680WD40 repeatRepeat
R [auth LJ]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
R [auth LJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth LK],
T [auth LL]
IPR007148Small-subunit processome, Utp12Domain
S [auth LK],
T [auth LL]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
S [auth LK],
T [auth LL]
IPR001680WD40 repeatRepeat
S [auth LK],
T [auth LL]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth LM]IPR016024Armadillo-type foldHomologous Superfamily
U [auth LM]IPR040191U3 small nucleolar RNA-associated protein 10Family
U [auth LM]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth LM]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
U [auth LM]IPR012954BP28, C-terminal domainDomain
V [auth LN]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth LN]IPR001680WD40 repeatRepeat
V [auth LN]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR019775WD40 repeat, conserved siteConserved Site
W [auth LO]IPR007148Small-subunit processome, Utp12Domain
W [auth LO]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
W [auth LO]IPR001680WD40 repeatRepeat
W [auth LO]IPR020472G-protein beta WD-40 repeatRepeat
W [auth LO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR027145Periodic tryptophan protein 2Family
X [auth LP]IPR003107HAT (Half-A-TPR) repeatRepeat
X [auth LP]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth LP]IPR013949U3 small nucleolar RNA-associated protein 6Family
Y [auth LQ]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
Y [auth LQ]IPR019775WD40 repeat, conserved siteConserved Site
Y [auth LQ]IPR007148Small-subunit processome, Utp12Domain
Y [auth LQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth LQ]IPR001680WD40 repeatRepeat
Y [auth LQ]IPR020472G-protein beta WD-40 repeatRepeat
Y [auth LQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth LR]IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
Z [auth LR]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
Z [auth LR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR001680WD40 repeatRepeat
Z [auth LR]IPR020472G-protein beta WD-40 repeatRepeat
Z [auth LR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR019775WD40 repeat, conserved siteConserved Site
AA [auth LS]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR001680WD40 repeatRepeat
AA [auth LS]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR045161U3 small nucleolar RNA-associated protein 18Family
BA [auth LT]IPR007319Small-subunit processome, Utp21Domain
BA [auth LT]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
BA [auth LT]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth LT]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth LT]IPR001680WD40 repeatRepeat
BA [auth LT]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR013979Translation initiation factor, beta propellor-like domainDomain
CA [auth LU]IPR019775WD40 repeat, conserved siteConserved Site
CA [auth LU]IPR007287Sof1-like proteinDomain
CA [auth LU]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR001680WD40 repeatRepeat
CA [auth LU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth LW]IPR012952BING4, C-terminal domainDomain
DA [auth LW]IPR001680WD40 repeatRepeat
DA [auth LW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth LW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth LW]IPR040315WD repeat-containing protein WDR46/Utp7Family
EA [auth LY]IPR023262Active regulator of SIRT1Family
FA [auth LZ]IPR002942RNA-binding S4 domainDomain
FA [auth LZ]IPR022801Small ribosomal subunit protein uS4Family
FA [auth LZ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
FA [auth LZ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
GA [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
HA [auth NB]IPR018972Sas10 C-terminal domainDomain
HA [auth NB]IPR007146Sas10/Utp3/C1DFamily
IA [auth ND]IPR039626Nucleolar protein 7Family
IA [auth ND]IPR012579U3 small nucleolar RNA-associated protein NOL7, C-terminalDomain
JA [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
JA [auth NF]IPR000589Small ribosomal subunit protein uS15Family
JA [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
JA [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
KA [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
KA [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
KA [auth NG]IPR001971Small ribosomal subunit protein uS11Family
LA [auth NH]IPR035367Nrap protein, domain 2Domain
LA [auth NH]IPR035368Nrap protein, domain 3Domain
LA [auth NH]IPR035370Nrap protein, domain 5Domain
LA [auth NH]IPR005554NOL6/Upt22Family
LA [auth NH]IPR035369Nrap protein, domain 4Domain
LA [auth NH]IPR035082Nrap protein domain 1Domain
LA [auth NH]IPR035371Nrap protein, domain 6Domain
MA [auth NI]IPR040446Ribosomal RNA-processing protein 7Family
MA [auth NI]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
MA [auth NI]IPR040447Rrp7, RRM-like N-terminal domainDomain
MA [auth NI]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
MA [auth NI]IPR035979RNA-binding domain superfamilyHomologous Superfamily
MA [auth NI]IPR034890Rrp7A, RNA recognition motifDomain
NA [auth NL]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
NA [auth NL]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
NA [auth NL]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
NA [auth NL]IPR011530Ribosomal RNA adenine dimethylaseFamily
NA [auth NL]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
OA [auth NM]IPR001593Small ribosomal subunit protein eS1Family
OA [auth NM]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
OA [auth NM]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
PA [auth NO]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
PA [auth NO]IPR000630Small ribosomal subunit protein uS8Family
PA [auth NO]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
QA [auth NP]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
QA [auth NP]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
QA [auth NP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
QA [auth NP]IPR001266Small ribosomal subunit protein eS19Family
RA [auth NQ]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
RA [auth NQ]IPR000592Small ribosomal subunit protein eS27Family
RA [auth NQ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth NS]IPR011709DEAD-box helicase, OB foldDomain
TA [auth NS]IPR001650Helicase, C-terminal domain-likeDomain
TA [auth NS]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
TA [auth NS]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
TA [auth NS]IPR007502Helicase-associated domainDomain
TA [auth NS]IPR011545DEAD/DEAH box helicase domainDomain
TA [auth NS]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
UA [auth NT]IPR019954Ubiquitin conserved siteConserved Site
UA [auth NT]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth NT]IPR000626Ubiquitin-like domainDomain
UA [auth NT]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
UA [auth NT]IPR002906Small ribosomal subunit protein eS31Domain
UA [auth NT]IPR019956Ubiquitin domainDomain
UA [auth NT]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
VA [auth NU]IPR001210Small ribosomal subunit protein eS17Family
VA [auth NU]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
VA [auth NU]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
WA [auth NV]IPR036397Ribonuclease H superfamilyHomologous Superfamily
WA [auth NV]IPR002121HRDC domainDomain
WA [auth NV]IPR010997HRDC-like superfamilyHomologous Superfamily
WA [auth NV]IPR012588Exosome-associated factor Rrp6, N-terminalDomain
WA [auth NV]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
WA [auth NV]IPR045092Exosome complex exonuclease Rrp6-likeFamily
WA [auth NV]IPR0025623'-5' exonuclease domainDomain
WA [auth NV]IPR049559Rrp6-like, 3'-5' exonuclease domainDomain
WA [auth NV]IPR044876HRDC domain superfamilyHomologous Superfamily
XA [auth SA]IPR042239Nop, C-terminal domainHomologous Superfamily
XA [auth SA]IPR012974Nucleolar protein 58/56, N-terminalDomain
XA [auth SA]IPR002687Nop domainDomain
XA [auth SA]IPR012976NOSICDomain
XA [auth SA]IPR036070Nop domain superfamilyHomologous Superfamily
XA [auth SA]IPR045056Nucleolar protein Nop56/Nop58Family
E [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth L4]IPR002942RNA-binding S4 domainDomain
E [auth L4]IPR000876Small ribosomal subunit protein eS4Family
E [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth L4]IPR005824KOWDomain
YA [auth SB]IPR042239Nop, C-terminal domainHomologous Superfamily
YA [auth SB]IPR012974Nucleolar protein 58/56, N-terminalDomain
YA [auth SB]IPR002687Nop domainDomain
YA [auth SB]IPR012976NOSICDomain
YA [auth SB]IPR036070Nop domain superfamilyHomologous Superfamily
YA [auth SB]IPR045056Nucleolar protein Nop56/Nop58Family
AB [auth SD],
ZA [auth SC]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
AB [auth SD],
ZA [auth SC]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
AB [auth SD],
ZA [auth SC]
IPR020813Fibrillarin, conserved siteConserved Site
BB [auth SE],
CB [auth SF]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
BB [auth SE],
CB [auth SF]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BB [auth SE],
CB [auth SF]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
BB [auth SE],
CB [auth SF]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BB [auth SE],
CB [auth SF]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
DB [auth SG]IPR019775WD40 repeat, conserved siteConserved Site
DB [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DB [auth SG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
DB [auth SG]IPR001680WD40 repeatRepeat
DB [auth SG]IPR020472G-protein beta WD-40 repeatRepeat
DB [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EB [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
EB [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
EB [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
EB [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
EB [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
EB [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
EB [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
EB [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
FB [auth SI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
FB [auth SI]IPR030387Bms1/Tsr1-type G domainDomain
FB [auth SI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
FB [auth SI]IPR012948AARP2CNDomain
FB [auth SI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
FB [auth SI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GB [auth SJ],
HB [auth SK]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
GB [auth SJ],
HB [auth SK]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
GB [auth SJ],
HB [auth SK]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
IB [auth SL]IPR002716PIN domainDomain
IB [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
IB [auth SL]IPR006984rRNA-processing protein Fcf1/Utp23Family
IB [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
JB [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
JB [auth SM]IPR007109Brix domainDomain
KB [auth SP]IPR016024Armadillo-type foldHomologous Superfamily
KB [auth SP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
KB [auth SP]IPR046523U3 small nucleolar RNA-associated protein 20, C-terminalDomain
F [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth L5]IPR000235Small ribosomal subunit protein uS7Family
F [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
LB [auth SQ]IPR039883Fcf2/DNTTIP2Family
LB [auth SQ]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
MB [auth SR]IPR006032Small ribosomal subunit protein uS12Family
MB [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MB [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
NB [auth SS]IPR006709Small-subunit processome, Utp14Family
QB [auth SW]IPR004087K Homology domainDomain
QB [auth SW]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
SB [auth SY]IPR007144Small-subunit processome, Utp11Family
G [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
G [auth L6]IPR001377Small ribosomal subunit protein eS6Family
G [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
H [auth L7]IPR000554Small ribosomal subunit protein eS7Family
H [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth L8]IPR001047Small ribosomal subunit protein eS8Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
J [auth L9]PharosP46781
K [auth LA]PharosP25398
L [auth LC]PharosP62249
M [auth LD]PharosP62280
N [auth LF]PharosP62847
O [auth LG]PharosP62857
P [auth LH]PharosQ8IWA0
R [auth LJ]PharosQ8TED0
S [auth LK],
T [auth LL]
PharosQ15061
U [auth LM]PharosQ9H583
V [auth LN]PharosQ969X6
W [auth LO]PharosQ15269
X [auth LP]PharosQ9NYH9
Y [auth LQ]PharosQ9UNX4
Z [auth LR]PharosQ12788
AA [auth LS]PharosQ9Y5J1
BA [auth LT]PharosQ8NI36
CA [auth LU]PharosQ9NV06
DA [auth LW]PharosO15213
EA [auth LY]PharosQ86WX3
FA [auth LZ]PharosQ9NV31
GA [auth NA]PharosO00566
HA [auth NB]PharosQ9NQZ2
IA [auth ND]PharosQ9UMY1
JA [auth NF]PharosP62277
KA [auth NG]PharosP62263
LA [auth NH]PharosQ9H6R4
MA [auth NI]PharosQ9Y3A4
NA [auth NL]PharosQ9UNQ2
PA [auth NO]PharosP62244
QA [auth NP]PharosP39019
RA [auth NQ]PharosP42677
TA [auth NS]PharosQ8IY37
UA [auth NT]PharosP62979
VA [auth NU]PharosP08708
WA [auth NV]PharosQ01780
XA [auth SA]PharosO00567
E [auth L4]PharosP62701
YA [auth SB]PharosQ9Y2X3
AB [auth SD],
ZA [auth SC]
PharosP22087
BB [auth SE],
CB [auth SF]
PharosP55769
DB [auth SG]PharosO43818
EB [auth SH]PharosQ9Y2P8
FB [auth SI]PharosQ14692
GB [auth SJ],
HB [auth SK]
PharosQ92979
IB [auth SL]PharosQ9Y324
JB [auth SM]PharosQ96G21
KB [auth SP]PharosO75691
F [auth L5]PharosP46782
LB [auth SQ]PharosQ5QJE6
MB [auth SR]PharosP62266
NB [auth SS]PharosQ9BVJ6
QB [auth SW]PharosQ9NRX1
SB [auth SY]PharosQ9Y3A2
G [auth L6]PharosP62753
H [auth L7]PharosP62081
I [auth L8]PharosP62241