7M7J | pdb_00007m7j

6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: "turnstile closed" state (TE-free)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]TRPM2e7m7jB01 A: a/b three-layered sandwichesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: TRPM2ECOD (v294.1)
ESecretin_Ne7m7jE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
CSecretin_Ne7m7jC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
FSecretin_Ne7m7jF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
DSecretin_Ne7m7jD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C, E
Heavy ChainIGHV3 -eryaiSAbDab (2026-03-27)
D, F
Light ChainIGKV2 KappaeryaiSAbDab (2026-03-27)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
B [auth A]
EryAI -
C, E
1B2 (heavy chain)---
D, F
1B2 (light chain)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
B [auth A]
IPR014031Beta-ketoacyl synthase, C-terminal domainDomain
A [auth B],
B [auth A]
IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
A [auth B],
B [auth A]
IPR006162Phosphopantetheine attachment sitePTM
A [auth B],
B [auth A]
IPR032821Polyketide synthase, C-terminal extensionDomain
A [auth B],
B [auth A]
IPR057326Ketoreductase domainDomain
A [auth B],
B [auth A]
IPR009081Phosphopantetheine binding ACP domainDomain
A [auth B],
B [auth A]
IPR020806Polyketide synthase-like, phosphopantetheine-binding domainDomain
A [auth B],
B [auth A]
IPR014030Beta-ketoacyl synthase-like, N-terminal domainDomain
A [auth B],
B [auth A]
IPR013968Polyketide synthase-like, ketoreductase domainDomain
A [auth B],
B [auth A]
IPR016039Thiolase-likeHomologous Superfamily
A [auth B],
B [auth A]
IPR001227Acyl transferase domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
A [auth B],
B [auth A]
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR050091Polyketide and Nonribosomal Peptide Biosynthesis EnzymesFamily
A [auth B],
B [auth A]
IPR018201Beta-ketoacyl synthase, active siteActive Site
A [auth B],
B [auth A]
IPR020841Polyketide synthase, beta-ketoacyl synthase domainDomain
A [auth B],
B [auth A]
IPR036736ACP-like superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR014043Acyl transferase domainDomain
A [auth B],
B [auth A]
IPR014031Beta-ketoacyl synthase, C-terminal domainDomain
A [auth B],
B [auth A]
IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
A [auth B],
B [auth A]
IPR006162Phosphopantetheine attachment sitePTM
A [auth B],
B [auth A]
IPR032821Polyketide synthase, C-terminal extensionDomain
A [auth B],
B [auth A]
IPR057326Ketoreductase domainDomain
A [auth B],
B [auth A]
IPR009081Phosphopantetheine binding ACP domainDomain
A [auth B],
B [auth A]
IPR020806Polyketide synthase-like, phosphopantetheine-binding domainDomain
A [auth B],
B [auth A]
IPR014030Beta-ketoacyl synthase-like, N-terminal domainDomain
A [auth B],
B [auth A]
IPR013968Polyketide synthase-like, ketoreductase domainDomain
A [auth B],
B [auth A]
IPR016039Thiolase-likeHomologous Superfamily
A [auth B],
B [auth A]
IPR001227Acyl transferase domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
A [auth B],
B [auth A]
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR050091Polyketide and Nonribosomal Peptide Biosynthesis EnzymesFamily
A [auth B],
B [auth A]
IPR018201Beta-ketoacyl synthase, active siteActive Site
A [auth B],
B [auth A]
IPR020841Polyketide synthase, beta-ketoacyl synthase domainDomain
A [auth B],
B [auth A]
IPR036736ACP-like superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR014043Acyl transferase domainDomain