7M7J

6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: "turnstile closed" state (TE-free)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF07654e7m7jC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
CPF07686e7m7jC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
EPF07654e7m7jE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
EPF07686e7m7jE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
DPF07654e7m7jD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
DPF07686e7m7jD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
FPF07654e7m7jF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
FPF07686e7m7jF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C, E
Heavy ChainIGHV3 -eryaiSAbDab (2024-05-03)
D, F
Light ChainIGKV2 KappaeryaiSAbDab (2024-05-03)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
B [auth A]
PF02801Beta-ketoacyl synthase, C-terminal domain (Ketoacyl-synt_C)Beta-ketoacyl synthase, C-terminal domainThe structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.Domain
A [auth B],
B [auth A]
PF00109Beta-ketoacyl synthase, N-terminal domain (ketoacyl-synt)Beta-ketoacyl synthase, N-terminal domainThe structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains m ...The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine [1].
Domain
A [auth B],
B [auth A]
PF16197Ketoacyl-synthetase C-terminal extension (KAsynt_C_assoc)Ketoacyl-synthetase C-terminal extension- Family
A [auth B],
B [auth A]
PF08659KR domain (KR)KR domain- Family
A [auth B],
B [auth A]
PF00698Acyl transferase domain (Acyl_transf_1)Acyl transferase domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, E
1B2 (heavy chain)---
A [auth B],
B [auth A]
EryAI -
D, F
1B2 (light chain)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
B [auth A]
IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
A [auth B],
B [auth A]
IPR014031Beta-ketoacyl synthase, C-terminalDomain
A [auth B],
B [auth A]
IPR006162Phosphopantetheine attachment sitePTM
A [auth B],
B [auth A]
IPR032821Polyketide synthase, C-terminal extensionDomain
A [auth B],
B [auth A]
IPR009081Phosphopantetheine binding ACP domainDomain
A [auth B],
B [auth A]
IPR014030Beta-ketoacyl synthase, N-terminalDomain
A [auth B],
B [auth A]
IPR013968Polyketide synthase, ketoreductase domainDomain
A [auth B],
B [auth A]
IPR016039Thiolase-likeHomologous Superfamily
A [auth B],
B [auth A]
IPR001227Acyl transferase domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
A [auth B],
B [auth A]
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR020806Polyketide synthase, phosphopantetheine-binding domainDomain
A [auth B],
B [auth A]
IPR014043Acyl transferaseDomain
A [auth B],
B [auth A]
IPR018201Beta-ketoacyl synthase, active siteActive Site
A [auth B],
B [auth A]
IPR020841Polyketide synthase, beta-ketoacyl synthase domainDomain
A [auth B],
B [auth A]
IPR036736ACP-like superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
A [auth B],
B [auth A]
IPR014031Beta-ketoacyl synthase, C-terminalDomain
A [auth B],
B [auth A]
IPR006162Phosphopantetheine attachment sitePTM
A [auth B],
B [auth A]
IPR032821Polyketide synthase, C-terminal extensionDomain
A [auth B],
B [auth A]
IPR009081Phosphopantetheine binding ACP domainDomain
A [auth B],
B [auth A]
IPR014030Beta-ketoacyl synthase, N-terminalDomain
A [auth B],
B [auth A]
IPR013968Polyketide synthase, ketoreductase domainDomain
A [auth B],
B [auth A]
IPR016039Thiolase-likeHomologous Superfamily
A [auth B],
B [auth A]
IPR001227Acyl transferase domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
A [auth B],
B [auth A]
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR020806Polyketide synthase, phosphopantetheine-binding domainDomain
A [auth B],
B [auth A]
IPR014043Acyl transferaseDomain
A [auth B],
B [auth A]
IPR018201Beta-ketoacyl synthase, active siteActive Site
A [auth B],
B [auth A]
IPR020841Polyketide synthase, beta-ketoacyl synthase domainDomain
A [auth B],
B [auth A]
IPR036736ACP-like superfamilyHomologous Superfamily