7KZV
Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in closed state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
O [auth X] | SCOP2B Superfamily | UBC-like | 8034448 | 3000570 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | ARM repeat-like | 8102755 | 3000116 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | MgtE/FliG domain-like | 8092488 | 3000127 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | UBC-like | 8053875 | 3000570 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | RING/U-box like | 8095995 | 3000160 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | UBC-like | 8053874 | 3000570 | SCOP2B (2022-06-29) |
N [auth M] | SCOP2B Superfamily | UBC-like | 8053875 | 3000570 | SCOP2B (2022-06-29) |
N [auth M] | SCOP2B Superfamily | UBC-like | 8053874 | 3000570 | SCOP2B (2022-06-29) |
N [auth M] | SCOP2B Superfamily | RING/U-box like | 8095995 | 3000160 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
O [auth X] | UQ_con | e7kzvX1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
P [auth U] | FANCI_S1 | e7kzvU1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: FANCI_S1 | ECOD (1.6) |
Q [auth V] | FancD2 | e7kzvV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: FancD2 | ECOD (1.6) |
H [auth L] | F_UNCLASSIFIED | e7kzvL3 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth L] | WD-3_2nd | e7kzvL2 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: WD-3_2nd | ECOD (1.6) |
H [auth L] | WD-3_3rd | e7kzvL1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: WD-3_3rd | ECOD (1.6) |
H [auth L] | FANCL_C | e7kzvL4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: FANCL_C | ECOD (1.6) |
N [auth M] | F_UNCLASSIFIED | e7kzvM3 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: F_UNCLASSIFIED | ECOD (1.6) |
N [auth M] | WD-3_2nd | e7kzvM2 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: WD-3_2nd | ECOD (1.6) |
N [auth M] | WD-3_3rd | e7kzvM1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: WD-3_3rd | ECOD (1.6) |
N [auth M] | FANCL_C | e7kzvM4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: FANCL_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, L [auth S] | PF15865 | Fanconi anaemia group A protein N terminus (Fanconi_A_N) | Fanconi anaemia group A protein N terminus | - | Family |
A, L [auth S] | PF03511 | Fanconi anaemia group A protein (Fanconi_A) | Fanconi anaemia group A protein | - | Family |
O [auth X] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
P [auth U] | PF14674 | FANCI solenoid 1 cap (FANCI_S1-cap) | FANCI solenoid 1 cap | - | Repeat |
P [auth U] | PF14675 | FANCI solenoid 1 (FANCI_S1) | FANCI solenoid 1 | - | Repeat |
P [auth U] | PF14676 | FANCI solenoid 2 (FANCI_S2) | FANCI solenoid 2 | - | Repeat |
P [auth U] | PF14677 | FANCI solenoid 3 (FANCI_S3) | FANCI solenoid 3 | - | Repeat |
P [auth U] | PF14678 | FANCI solenoid 4 (FANCI_S4) | FANCI solenoid 4 | - | Repeat |
P [auth U] | PF14679 | FANCI helical domain 1 (FANCI_HD1) | FANCI helical domain 1 | - | Repeat |
PF02106 | Fanconi anaemia group C protein (Fanconi_C) | Fanconi anaemia group C protein | - | Family | |
E [auth F] | PF11107 | Fanconi anemia group F protein (FANCF) (FANCF) | Fanconi anemia group F protein (FANCF) | - | Repeat |
H [auth L], N [auth M] | PF18890 | FANCL UBC-like domain 2 (FANCL_d2) | FANCL UBC-like domain 2 | This entry represents the second of three UBC-like domain found in the FANCL protein, which is the catalytic E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nucl ... | Domain |
H [auth L], N [auth M] | PF18891 | FANCL UBC-like domain 3 (FANCL_d3) | FANCL UBC-like domain 3 | This entry represents the third of three UBC-like domain found in the FANCL protein, which is the catalytic E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nucle ... | Domain |
H [auth L], N [auth M] | PF09765 | FANCL UBC-like domain 1 (FANCL_d1) | FANCL UBC-like domain 1 | This entry represents the first of three UBC-like domain found in the FANCL protein, which is the catalytic E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nucle ... | Domain |
H [auth L], N [auth M] | PF11793 | FANCL C-terminal domain (FANCL_C) | FANCL C-terminal domain | This domain is found at the C-terminus of the Fancl protein in humans which is the E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia) that mediates monoubiquitination of FANCD2. This entry represents the RING domain which recruits the UB ... | Domain |
J [auth P], K [auth Q] | PF15146 | Fanconi anemia-associated (FANCAA) | Fanconi anemia-associated | - | Family |