7KUH | pdb_00007kuh

MicroED structure of mVDAC

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	EF-hand_7	e7kuhX1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EF-hand_7	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF01459	Eukaryotic porin (Porin_3)	Eukaryotic porin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Voltage-dependent anion-selective channel protein 1	ceramide binding binding sphingolipid binding lipid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding ceramide binding binding sphingolipid binding lipid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity protein-containing complex binding gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity monoatomic ion transmembrane transporter activity cation binding phosphatidylcholine binding phospholipid binding quaternary ammonium group binding identical protein binding protein binding monoatomic anion transmembrane transporter activity voltage-gated monoatomic anion channel activity monoatomic anion channel activity sterol binding alcohol binding steroid binding cholesterol binding transmembrane transporter binding kinase binding enzyme binding protein kinase binding oxysterol binding	behavior multicellular organismal process system process learning learning or memory nervous system process cognition regulation of calcium ion transport regulation of localization regulation of cellular process transport monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of biological process behavior multicellular organismal process system process learning learning or memory nervous system process cognition regulation of calcium ion transport regulation of localization regulation of cellular process transport monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of biological process negative regulation of transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport negative regulation of transmembrane transport monoatomic cation transmembrane transport regulation of calcium ion transmembrane transport localization intercellular transport negative regulation of monoatomic ion transmembrane transport regulation of calcium import into the mitochondrion negative regulation of cellular process monoatomic ion transport negative regulation of cation transmembrane transport calcium import into the mitochondrion monoatomic cation transport regulation of metal ion transport negative regulation of calcium import into the mitochondrion regulation of biological process regulation of transport regulation of monoatomic ion transport biological regulation establishment of localization negative regulation of calcium ion transport transmembrane transport regulation of transmembrane transport mitochondrial calcium ion transmembrane transport cellular process regulation of monoatomic cation transmembrane transport negative regulation of calcium ion transmembrane transport calcium ion transmembrane transport apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation catabolic process regulation of type 2 mitophagy macroautophagy positive regulation of type 2 mitophagy autophagy regulation of autophagy positive regulation of autophagy of mitochondrion positive regulation of metabolic process mitophagy regulation of autophagy of mitochondrion positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of autophagy positive regulation of mitophagy regulation of mitophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy type 2 mitophagy metabolic process regulation of metabolic process autophagy of mitochondrion negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process trans-synaptic signaling synaptic signaling signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission cell communication cellular localization establishment of localization in cell intracellular transport mitochondrial transmembrane transport mitochondrial transport neuron-neuron synaptic transmission negative regulation of programmed cell death negative regulation of apoptotic process macromolecule localization lipid localization lipid transport monoatomic anion transport aerobic respiration cellular respiration energy derivation by oxidation of organic compounds oxoacid metabolic process acetyl-CoA metabolic process organic acid metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process phosphate-containing compound metabolic process sulfur compound metabolic process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process pyruvate metabolic process carboxylic acid metabolic process pyruvate decarboxylation to acetyl-CoA primary metabolic process generation of precursor metabolites and energy nucleobase-containing compound biosynthetic process purine-containing compound metabolic process acetyl-CoA biosynthetic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process monocarboxylic acid metabolic process behavioral defense response fear response behavioral fear response response to stimulus defense response response to stress multicellular organismal response to stress	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope mitochondrial envelope cytoplasm organelle membrane organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane membrane-enclosed lumen intracellular membraneless organelle nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen membraneless organelle mitochondrial nucleoid transport vesicle intracellular vesicle endomembrane system presynapse cytoplasmic vesicle synaptic vesicle secretory vesicle vesicle exocytic vesicle organelle inner membrane mitochondrial inner membrane myelin sheath membrane microdomain membrane raft protein-containing complex presynaptic active zone membrane presynaptic membrane presynaptic active zone mitochondrial permeability transition pore complex mitochondrial protein-containing complex membrane protein complex pore complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR023614	Porin domain superfamily	Homologous Superfamily
A [auth X]	IPR027246	Eukaryotic porin/Tom40	Family
A [auth X]	IPR001925	Porin, eukaryotic type	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth X]	OPM	Transmembrane	Beta-barrel transmembrane	Mitochondrial and plastid porins	Voltage-dependent anion channel (VDAC) porin (n=19,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth X]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth X]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth X]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Mitochondrial Outer Membrane Beta Barrel Proteins	VDAC-1 voltage dependent anion channel by micro electron diffraction (microED)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.