7C0M | pdb_00007c0m

Human cGAS-nucleosome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KSCOP2B SuperfamilyNucleotidyltransferase-like 8055835 3000129 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8055833 3000941 SCOP2B (2022-06-29)
V [auth k]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8055833 3000941 SCOP2B (2022-06-29)
V [auth k]SCOP2B SuperfamilyNucleotidyltransferase-like 8055835 3000129 SCOP2B (2022-06-29)
R [auth g]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
N [auth c]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
Q [auth f]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
M [auth b]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
P [auth e]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
L [auth a]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
KLdh_1_Ce7c0mK1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
V [auth k]Ldh_1_Ce7c0mk1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
S [auth h]Ldh_1_Ce7c0mh1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
O [auth d]Ldh_1_Ce7c0md1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
HLdh_1_Ce7c0mH1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
DLdh_1_Ce7c0mD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
R [auth g]Ldh_1_Ce7c0mg1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
N [auth c]Ldh_1_Ce7c0mc1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
GLdh_1_Ce7c0mG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
CLdh_1_Ce7c0mC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
Q [auth f]Ldh_1_Ce7c0mf1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
M [auth b]Ldh_1_Ce7c0mb1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
FLdh_1_Ce7c0mF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
BLdh_1_Ce7c0mB1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
P [auth e]Ldh_1_Ce7c0me1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
L [auth a]Ldh_1_Ce7c0ma1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
ELdh_1_Ce7c0mE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
ALdh_1_Ce7c0mA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K,
V [auth k]
PF03281Mab-21 protein nucleotidyltransferase domain (Mab-21)Mab-21 protein nucleotidyltransferase domainThis family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development [2-3]. Domain
K,
V [auth k]
PF20266Mab-21 protein HhH/H2TH-like domain (Mab-21_C)Mab-21 protein HhH/H2TH-like domainThis family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development [2-3]. Domain
C,
G,
N [auth c],
R [auth g]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
B,
F,
M [auth b],
Q [auth f]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
A,
E,
L [auth a],
P [auth e]
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
K,
V [auth k]
Cyclic GMP-AMP synthase
J,
U [auth j]
DNA (145-MER)---
I,
T [auth i]
DNA (145-MER)---
D,
H,
O [auth d],
S [auth h]
Histone H2B type 1-J
C,
G,
N [auth c],
R [auth g]
Histone H2A type 1-B/E
B,
F,
M [auth b],
Q [auth f]
Histone H4
A,
E,
L [auth a],
P [auth e]
Histone H3.1

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
K,
V [auth k]
PharosQ8N884
D,
H,
O [auth d],
S [auth h]
PharosP06899
C,
G,
N [auth c],
R [auth g]
PharosP04908
B,
F,
M [auth b],
Q [auth f]
PharosP62805
A,
E,
L [auth a],
P [auth e]
PharosP68431