7B9K

Cryo-EM structure of the dihydrolipoyl transacetylase cubic core of the E. coli pyruvate dehydrogenase complex including lipoyl domains


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
SSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
VSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
WSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
XSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
GSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
LSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
MSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
NSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
OSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
PSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
QSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
TSCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)
USCOP2B SuperfamilySingle hybrid motif8043100 3001880 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D2-oxoacid_dhe7b9kD1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
DBiotin_lipoyle7b9kD2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
H2-oxoacid_dhe7b9kH1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
HBiotin_lipoyle7b9kH2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
I2-oxoacid_dhe7b9kI1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
IBiotin_lipoyle7b9kI2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
J2-oxoacid_dhe7b9kJ1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
JBiotin_lipoyle7b9kJ2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
R2-oxoacid_dhe7b9kR1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
RBiotin_lipoyle7b9kR2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
S2-oxoacid_dhe7b9kS1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
SBiotin_lipoyle7b9kS2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
V2-oxoacid_dhe7b9kV1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
VBiotin_lipoyle7b9kV2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
W2-oxoacid_dhe7b9kW1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
WBiotin_lipoyle7b9kW2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
X2-oxoacid_dhe7b9kX1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
XBiotin_lipoyle7b9kX2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
A2-oxoacid_dhe7b9kA1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
ABiotin_lipoyle7b9kA2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
B2-oxoacid_dhe7b9kB1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
BBiotin_lipoyle7b9kB2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
C2-oxoacid_dhe7b9kC1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
CBiotin_lipoyle7b9kC2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
E2-oxoacid_dhe7b9kE1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
EBiotin_lipoyle7b9kE2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
F2-oxoacid_dhe7b9kF1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
FBiotin_lipoyle7b9kF2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
G2-oxoacid_dhe7b9kG1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
GBiotin_lipoyle7b9kG2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
K2-oxoacid_dhe7b9kK1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
KBiotin_lipoyle7b9kK2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
L2-oxoacid_dhe7b9kL1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
LBiotin_lipoyle7b9kL2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
M2-oxoacid_dhe7b9kM1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
MBiotin_lipoyle7b9kM2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
N2-oxoacid_dhe7b9kN1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
NBiotin_lipoyle7b9kN2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
O2-oxoacid_dhe7b9kO1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
OBiotin_lipoyle7b9kO2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
P2-oxoacid_dhe7b9kP1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
PBiotin_lipoyle7b9kP2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
Q2-oxoacid_dhe7b9kQ1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
QBiotin_lipoyle7b9kQ2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
T2-oxoacid_dhe7b9kT1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
TBiotin_lipoyle7b9kT2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
U2-oxoacid_dhe7b9kU1 A: a+b complex topologyX: CoA-dependent acyltransferases (From Topology)H: CoA-dependent acyltransferases (From Topology)T: CoA-dependent acyltransferasesF: 2-oxoacid_dhECOD (1.6)
UBiotin_lipoyle7b9kU2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF001982-oxoacid dehydrogenases acyltransferase (catalytic domain) (2-oxoacid_dh)2-oxoacid dehydrogenases acyltransferase (catalytic domain)These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.Domain
A, B, C, D, E
PF00364Biotin-requiring enzyme (Biotin_lipoyl)Biotin-requiring enzymeThis family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR0010782-oxoacid dehydrogenase acyltransferase, catalytic domainDomain
A, B, C, D, E
IPR023213Chloramphenicol acetyltransferase-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR006256Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complexFamily
A, B, C, D, E
IPR036625E3-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR004167Peripheral subunit-binding domainDomain
A, B, C, D, E
IPR011053Single hybrid motifHomologous Superfamily
A, B, C, D, E
IPR0030162-oxo acid dehydrogenase, lipoyl-binding siteBinding Site
A, B, C, D, E
IPR000089Biotin/lipoyl attachmentDomain