7AY1
Cryo-EM structure of USP1-UAF1 bound to mono-ubiquitinated FANCD2, and FANCI
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Ubiquitin-like | 8066187 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF14675,PF14676,PF14677,PF14678,PF14679,PF14680 | e7ay1A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF14675,PF14676,PF14677,PF14678,PF14679,PF14680 | ECOD (1.6) |
B | PF14631 | e7ay1B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF14631 | ECOD (1.6) |
C | PF00240 | e7ay1C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D | PF00443 | e7ay1D1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00443 | ECOD (1.6) |
E | PF00400 | e7ay1E2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
E | F_UNCLASSIFIED | e7ay1E1 | A: beta duplicates or obligate multimers | X: WD repeat-containing protein 48 ancillary domain (From Topology) | H: WD repeat-containing protein 48 ancillary domain (From Topology) | T: WD repeat-containing protein 48 ancillary domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF11816 | e7ay1E3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF11816 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14675 | FANCI solenoid 1 (FANCI_S1) | FANCI solenoid 1 | - | Repeat | |
PF14676 | FANCI solenoid 2 (FANCI_S2) | FANCI solenoid 2 | - | Repeat | |
PF14677 | FANCI solenoid 3 (FANCI_S3) | FANCI solenoid 3 | - | Repeat | |
PF14678 | FANCI solenoid 4 (FANCI_S4) | FANCI solenoid 4 | - | Repeat | |
PF14679 | FANCI helical domain 1 (FANCI_HD1) | FANCI helical domain 1 | - | Repeat | |
PF14631 | Fanconi anaemia protein FancD2 nuclease (FancD2) | Fanconi anaemia protein FancD2 nuclease | - | Family | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
PF11816 | Domain of unknown function (DUF3337) (DUF3337) | Domain of unknown function (DUF3337) | - | Family | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |