7AJP | pdb_00007ajp

Crystal Structure of Human Adenovirus 56 Fiber Knob

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7ajpa_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
C	d7ajpc_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
D	d7ajpd_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
F	d7ajpf_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
G	d7ajpg_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
H	d7ajph_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
I	d7ajpi_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
J	d7ajpj_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
K	d7ajpk_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
L	d7ajpl_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
E	d7ajpe_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)
B	d7ajpb_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 56 ) [TaxId: 880565 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
I	SCOP2 Family	Adenovirus fiber protein knob domain	8102219	4002523	SCOP2 (2022-06-29)
I	SCOP2 Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2 (2022-06-29)
J	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Virus attachment protein globular domain	8102220	3001376	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
C	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
D	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
F	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
G	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
H	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
I	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpI1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
J	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpJ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
K	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpK1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
L	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpL1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
E	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)
B	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	e7ajpB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Fiber	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction cell adhesion cellular process symbiont entry into host cell symbiont entry into host	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009013	Attachment protein shaft domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000978	Adenoviral fibre protein, knob	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000931	Adenovirus fibre protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.