7AGX | pdb_00007agx

Apo-state type 3 secretion system export apparatus complex from Salmonella enterica typhimurium

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth 2J]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
Y [auth 2I]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
X [auth 2H]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
W [auth 2G]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
V [auth 2F]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
CA [auth 2M]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
BA [auth 2L]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
AA [auth 2K]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth 2J]	T3SS_needle_F	e7agx2J1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
Y [auth 2I]	T3SS_needle_F	e7agx2I1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
X [auth 2H]	T3SS_needle_F	e7agx2H1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
W [auth 2G]	T3SS_needle_F	e7agx2G1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
V [auth 2F]	T3SS_needle_F	e7agx2F1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
U [auth 2E]	T3SS_needle_F	e7agx2E1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
T [auth 2D]	T3SS_needle_F	e7agx2D1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
S [auth 2C]	T3SS_needle_F	e7agx2C1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
R [auth 2B]	T3SS_needle_F	e7agx2B1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
Q [auth 2A]	T3SS_needle_F	e7agx2A1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
FA [auth 2P]	T3SS_needle_F	e7agx2P1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
EA [auth 2O]	T3SS_needle_F	e7agx2O1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
DA [auth 2N]	T3SS_needle_F	e7agx2N1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
CA [auth 2M]	T3SS_needle_F	e7agx2M1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
BA [auth 2L]	T3SS_needle_F	e7agx2L1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
AA [auth 2K]	T3SS_needle_F	e7agx2K1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: T3SS_needle_F	ECOD (1.6)
P [auth 1P]	F_UNCLASSIFIED	e7agx1P1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
O [auth 1O]	F_UNCLASSIFIED	e7agx1O1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
N [auth 1N]	F_UNCLASSIFIED	e7agx1N1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
M [auth 1M]	F_UNCLASSIFIED	e7agx1M1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
L [auth 1L]	F_UNCLASSIFIED	e7agx1L1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
K [auth 1K]	F_UNCLASSIFIED	e7agx1K1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	PF09392	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF (T3SS_needle_F)	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF	-	Family
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	PF01313	Bacterial export proteins, family 3 (Bac_export_3)	Bacterial export proteins, family 3	-	Family
F [auth 1F]	PF01311	Bacterial export proteins, family 1 (Bac_export_1)	Bacterial export proteins, family 1	-	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	PF00813	FliP family (FliP)	FliP family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	Protein PrgI	identical protein binding protein binding binding	establishment of protein localization nitrogen compound transport transport secretion protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport establishment of protein localization nitrogen compound transport transport secretion protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell surface cellular anatomical structure extracellular region protein-containing complex type III protein secretion system complex
K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P]	Protein PrgJ	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	-
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	Surface presentation of antigens protein SpaQ	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization nitrogen compound transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
F [auth 1F]	Surface presentation of antigens protein SpaR	-	localization establishment of protein localization protein targeting establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	Surface presentation of antigens protein SpaP	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	IPR037203	Type III secretion, needle-protein-like superfamily	Homologous Superfamily
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	IPR021123	Type III secretion, needle-protein-like	Family
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	IPR011841	Type III secretion system, needle protein	Family
K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P]	IPR047754	T3SS inner rod subunit SctI-like	Family
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	IPR006306	Type III secretion protein HrpO	Family
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	IPR002191	Bacterial export protein family 3	Family
F [auth 1F]	IPR002010	Type III secretion system inner membrane R protein	Family
F [auth 1F]	IPR006304	Type III secretion protein SpaR/YscT	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	IPR005838	Type III secretion system inner membrane P protein	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	IPR005773	Type III secretion system, Yop virulence translocation protein R-like	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E] A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F], G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	OPM	Transmembrane	Alpha-helical polytopic	Type III secretory pathway	FliP family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E] A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F], G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	type III secretion system export apparatus, apo state