6Z7N
The atomic structure of HAdV-F41 at pH 7.4
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
K [auth A] | PF01065 | e6z7nA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
K [auth A] | PF03678 | e6z7nA2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
L [auth B] | PF01065 | e6z7nB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
L [auth B] | PF03678 | e6z7nB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
N [auth D] | PF01065 | e6z7nD2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
N [auth D] | PF03678 | e6z7nD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
P [auth F] | PF01065 | e6z7nF2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
P [auth F] | PF03678 | e6z7nF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
Q [auth G] | PF01065 | e6z7nG2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
Q [auth G] | PF03678 | e6z7nG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
R [auth H] | PF01065 | e6z7nH2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
R [auth H] | PF03678 | e6z7nH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
S [auth I] | PF01065 | e6z7nI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
S [auth I] | PF03678 | e6z7nI2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
U [auth K] | PF01065 | e6z7nK2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
U [auth K] | PF03678 | e6z7nK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
M [auth C] | PF01065 | e6z7nC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
M [auth C] | PF03678 | e6z7nC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
O [auth E] | PF01065 | e6z7nE2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
O [auth E] | PF03678 | e6z7nE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
T [auth J] | PF01065 | e6z7nJ2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
T [auth J] | PF03678 | e6z7nJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
V [auth L] | PF01065 | e6z7nL2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF01065 | ECOD (1.6) |
V [auth L] | PF03678 | e6z7nL1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF03678 | ECOD (1.6) |
W [auth M] | PF01686 | e6z7nM1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in Adenovirus penton base protein (From Topology) | T: Jelly-roll domain in Adenovirus penton base protein | F: PF01686 | ECOD (1.6) |
W [auth M] | PF01686 | e6z7nM2 | A: a+b complex topology | X: Insertion domain in Adenovirus penton base protein (From Topology) | H: Insertion domain in Adenovirus penton base protein (From Topology) | T: Insertion domain in Adenovirus penton base protein | F: PF01686 | ECOD (1.6) |
Y [auth O] | PF02455 | e6z7nO2 | A: alpha arrays | X: N-terminal domain of hexon-associated protein (IIIa) (From Topology) | H: N-terminal domain of hexon-associated protein (IIIa) (From Topology) | T: N-terminal domain of hexon-associated protein (IIIa) | F: PF02455 | ECOD (1.6) |
Y [auth O] | PF02455 | e6z7nO1 | A: alpha bundles | X: Middle domain of hexon-associated protein (IIIa) (From Topology) | H: Middle domain of hexon-associated protein (IIIa) (From Topology) | T: Middle domain of hexon-associated protein (IIIa) | F: PF02455 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02993 | Minor capsid protein VI (MCPVI) | Minor capsid protein VI | - | Family | |
PF01065 | Hexon, adenovirus major coat protein, N-terminal domain (Adeno_hexon) | Hexon, adenovirus major coat protein, N-terminal domain | Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ... | Domain | |
PF03678 | Hexon, adenovirus major coat protein, C-terminal domain (Adeno_hexon_C) | Hexon, adenovirus major coat protein, C-terminal domain | Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ... | Domain | |
W [auth M] | PF01686 | Adenovirus penton base protein (Adeno_Penton_B) | Adenovirus penton base protein | - | Family |
X [auth N] | PF03910 | Adenovirus minor core protein PV (Adeno_PV) | Adenovirus minor core protein PV | - | Family |
Y [auth O] | PF02455 | Hexon-associated protein (IIIa) (Hex_IIIa) | Hexon-associated protein (IIIa) | - | Family |
AA [auth Q], BA [auth R], CA [auth S], Z [auth P] | PF03955 | Adenovirus hexon-associated protein (IX) (Adeno_PIX) | Adenovirus hexon-associated protein (IX) | - | Family |
DA [auth T], EA [auth U] | PF01310 | Adenovirus hexon associated protein, protein VIII (Adeno_PVIII) | Adenovirus hexon associated protein, protein VIII | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004243 | Minor capsid protein VI | Family | |
IPR044942 | Adenovirus Pll, hexon, subdomain 2 | Homologous Superfamily | |
IPR016110 | Adenovirus Pll, hexon, subdomain 3 | Homologous Superfamily | |
IPR016107 | Adenovirus Pll, hexon, N-terminal | Domain | |
IPR016108 | Adenovirus Pll, hexon, C-terminal | Domain | |
IPR016112 | Group II dsDNA virus coat/capsid protein | Homologous Superfamily | |
IPR037542 | Adenovirus hexon protein | Family | |
W [auth M] | IPR002605 | Adenovirus penton base protein | Family |
X [auth N] | IPR005608 | Adenovirus core-capsid bridging protein V | Family |
Y [auth O] | IPR003479 | Pre-hexon-linking protein IIIa | Family |
Y [auth O] | IPR043053 | Pre-hexon-linking protein IIIa, N-terminal | Homologous Superfamily |
AA [auth Q], BA [auth R], CA [auth S], Z [auth P] | IPR005641 | Hexon-associated protein IX | Family |
DA [auth T], EA [auth U] | IPR000646 | Pre-hexon-linking protein VIII | Family |