6VPQ | pdb_00006vpq

Crystal structure of the C-terminal domain of DENR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Ribosomal_L41	e6vpqF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Ribosomal_L41	ECOD (v295.2)
E	Ribosomal_L41	e6vpqE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Ribosomal_L41	ECOD (v295.2)
D	Ribosomal_L41	e6vpqD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Ribosomal_L41	ECOD (v295.2)
C	Ribosomal_L41	e6vpqC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Ribosomal_L41	ECOD (v295.2)
B	Ribosomal_L41	e6vpqB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Ribosomal_L41	ECOD (v295.2)
A	NADH_4Fe-4S	e6vpqA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: NADH_4Fe-4S	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01253	Translation initiation factor SUI1 (SUI1)	Translation initiation factor SUI1		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Density-regulated protein	translation factor activity translation initiation factor activity	ribonucleoprotein complex biogenesis protein biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly translational initiation cellular component organization or biogenesis protein metabolic process formation of translation preinitiation complex protein-containing complex organization primary metabolic process ribonucleoprotein complex biogenesis protein biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly translational initiation cellular component organization or biogenesis protein metabolic process formation of translation preinitiation complex protein-containing complex organization primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process translation reinitiation viral gene expression viral process viral translation IRES-dependent viral translational initiation cellular component disassembly organelle organization organelle disassembly ribosome disassembly	protein-containing complex cellular anatomical structure intracellular anatomical structure ribonucleoprotein complex translation initiation complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR048517	DENR, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001950	SUI1 domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR046447	DENR, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036877	SUI1 domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005873	DENR, eukaryotes	Family
A, B, C, D, E A, B, C, D, E, F	IPR050318	DENR/SUI1 Translation Initiation Factor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	: O43583	atrial fibrillation lymphoplasmacytic lymphoma ovarian cancer dermatomyositis metabolic syndrome X plasma cell myeloma lung cancer oligodendroglioma psoriasis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F	CSO	Parent Component: CYS : AA0205 : L-cysteine sulfenic acid MOD:00210