6VPQ

Crystal structure of the C-terminal domain of DENR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01253	e6vpqA1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: PF01253	ECOD (1.6)
B	PF01253	e6vpqB1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: PF01253	ECOD (1.6)
C	PF01253	e6vpqC1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: PF01253	ECOD (1.6)
D	PF01253	e6vpqD1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: PF01253	ECOD (1.6)
E	PF01253	e6vpqE1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: PF01253	ECOD (1.6)
F	PF01253	e6vpqF1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: PF01253	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01253	Translation initiation factor SUI1 (SUI1)	Translation initiation factor SUI1	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Density-regulated protein	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding RNA binding mRNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process formation of translation preinitiation complex organonitrogen compound metabolic process protein-containing complex organization cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process translation reinitiation cellular component disassembly organelle organization organelle disassembly ribosome disassembly viral gene expression viral process viral translation IRES-dependent viral translational initiation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR048517	DENR, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001950	SUI1 domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR005873	DENR, eukaryotes	Family
A, B, C, D, E A, B, C, D, E, F	IPR046447	DENR, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036877	SUI1 domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: O43583	atrial fibrillation lymphoplasmacytic lymphoma ovarian cancer dermatomyositis metabolic syndrome X plasma cell myeloma lung cancer oligodendroglioma psoriasis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.